Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1243 ATGAGAAACATGTGCCATCGTGCTACAGTTCCACCATTGGTGTATATGAATCCTTGTCCCTGGAGAAATCTAGCGGGAGACGCAGCAACTAACAAGAAACAAGGAGACGAGAAAATGGGAAGAGCTCCTTGCTGCCAGAAAGTGGGGTTGAAGAGAGGTCCTTGGACTGCAGAAGAAGATCAGATTCTGATCAATCATGTCAACAAATATGGCCACAGCAATTGGCGAGCTCTCCCCAAATTAGCTGGGCTTCTGAGGTGTGGAAAAAGTTGCAGACTCCGATGGATCAATTATTTGAAGCCAGACATCAAACGAGGAAACTTCTCCCAAGAAGAAGAGGATACCATAATCAAGCTTCATGAAATGTTGGGAAACAGATGGTCGGCAATAGCAGCGAAGCTACCGGGCCGCACAGACAATGAAATAAAGAATGTGTGGCACACACACTTGAAGAAGAGGCTTCCACAGAACCAACAGAACCATCCCCAAACAAAACGAAAACCAAAAGAAAAGGAACAACACGCTGTCACCGACAACAGGCCACTCTCTCCTTCGCATTCAAGTGACGCGTCCACCGTCACCACCACCACCACGAACAACGATAACAGTATTACCACTAGTAGTCCTGCGACTAACGTTACTAACGACGACGACATGTCCATAAATATTAATGTTGAGCAGTCCCTGGCGTTGGACGATGATTTCTGGTCGGAAGTCCTGTCGGCTGATAACTCCGAGGAGACTACCGATTACGTTCCGGCAGCGGCAGGCGGTGGGGTGGAGTCAGAGTTTCAGTTCCTGTTGTCTCAACTAGACGATGCACATGTAGAAGGAGATCATGTGAGTTCATTAAGCATGGGCGATGGCATGGATTTTTGGTTTGATGTTTACAATAGAGCCGACCAATTCACGGAGCTACCACAGTTATGA 930 0.4742 MRNMCHRATVPPLVYMNPCPWRNLAGDAATNKKQGDEKMGRAPCCQKVGLKRGPWTAEEDQILINHVNKYGHSNWRALPKLAGLLRCGKSCRLRWINYLKPDIKRGNFSQEEEDTIIKLHEMLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLPQNQQNHPQTKRKPKEKEQHAVTDNRPLSPSHSSDASTVTTTTTNNDNSITTSSPATNVTNDDDMSININVEQSLALDDDFWSEVLSADNSEETTDYVPAAAGGGVESEFQFLLSQLDDAHVEGDHVSSLSMGDGMDFWFDVYNRADQFTELPQL 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1243 309 Gene3D - 49 105 - -
Lele06g1243 309 SUPERFAMILY Homeodomain-like 49 146 IPR009057 -
Lele06g1243 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 100 154 IPR017930 -
Lele06g1243 309 Pfam Myb-like DNA-binding domain 105 150 IPR001005 -
Lele06g1243 309 Pfam Myb-like DNA-binding domain 52 99 IPR001005 -
Lele06g1243 309 MobiDBLite consensus disorder prediction 178 217 - -
Lele06g1243 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 47 99 IPR017930 -
Lele06g1243 309 SMART sant 104 152 IPR001005 -
Lele06g1243 309 SMART sant 51 101 IPR001005 -
Lele06g1243 309 Gene3D - 107 180 - -
Lele06g1243 309 CDD SANT 107 150 IPR001005 -
Lele06g1243 309 CDD SANT 54 99 IPR001005 -
Lele06g1243 309 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 39 249 - -
Lele06g1243 309 MobiDBLite consensus disorder prediction 163 177 - -
Lele06g1243 309 ProSiteProfiles Myb-like domain profile. 100 150 IPR001005 -
Lele06g1243 309 MobiDBLite consensus disorder prediction 151 217 - -
Lele06g1243 309 FunFam MYB-related transcription factor 51 104 - -
Lele06g1243 309 FunFam Transcription factor MYB15 106 179 - -
Lele06g1243 309 ProSiteProfiles Myb-like domain profile. 47 99 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1243 Lele-ChrLele06 7882812 7885472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1243 39 309 MYB Transcription Factor Family AT2G31180 50.542 4.30e-88 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele06g1243 Myb_DNA-binding 4e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1243 06 7882812 7885472 Lele07g1445 07 8755300 8756685 hybridization
Lele06g1243 06 7882812 7885472 Lele08g1235 08 7828809 7831080 hybridization