Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1233 ATGCTTGCTTCAAATCCTTTTATTGCACGTGATATTAATATTGTTATATGTTTTACCAAACCAGGTAAACCTGATACAGCTTCAGTAAAATGTCTTGTCAACAGCATTTCTCGCTTCATTCATCTGGTTTCTTGCCAAACAATGAAACCTATGCCATTTCAGAAGAACTATAATCATATGACTGGCGTGTTAAAGCGTTTGAAACCAGTGCTTGATGACGTTATAGATTGCAAATCTTACTTGGATGAAAATTTATGTAAAGAGTGTGAAGATTTGGATATGGCAGTTAATGAAGCTCGAGAGTTCTTGGAAAATTGGAGCCCGAAGAGAAGCAGGATTCTAAGTGTTCTGCGAAGTGGGTCATTGTTGATGAAAATACAGATATCCTCAGTTGAAATTTGTCACTTGATATTTAGATCCCTACAGTCGCCTCCACCTACCTCGGTTTTGGCTAGTCTTGAGGAACTTAAATGTTTGAAGAAGGAACCAGCCACAGGCTATATAGAAGAGGCATTGACAAGTCAAAGAGAAAATATTGAACCTCACAATGAAAATCTAAAGAAAATCATCGAGTTACTTGGATTGACGGCAAACCTGGAACTCATGAAAGAAAGTATTGCTGTGGAAAAGGAAAGATTGAGTACTGAAGTCAAGAAAATGAAAGCGGAATTAGATGAAATTAATACAATTGTGGGTCTTATCTGCAGTCTACGTGATTATGCAATTAAATTTGTGCACCCTGAAGTCAAAAGTGGCATCTCAATTCCTTCGTACTTTATCTGTCCTTTATCATTGGAACTCATGATGGATCCTGTTATTGTGGCTTCAGGTCAGACATATGATAGGACGTCCATCCAAAAATGGCTTGATCATGGGTTGACTGTTTGTCCCAAGACTCGTCAGAGACTTGCTCATACAAACCTCATTCCTAATTATACTGTCAAGGCTATGGTAGGAAATTGGTGTGAGGAAAATAATGCTGAACTCTCCAGTTACTCTGAGTCCAATAATATGAAAACCTCCTTGGATCATCTATTGCCCCAAGATTTAGCTCGTTCTTGTAGTTTTGGGTCTGTGCATAGTAGCAATTCCACGTCAAGATCATCTCTTCAAACTGGAAATGCACTTGAGAAGCAAAAAGGTGATATCTCTTCCAGATTAAGTGGAGAATCCAATGGATGCCAGAGCGTAGAAATAGAAAAATTTGAGCAACAAACTCCTGCTCCTTCCTATATTTATAGTAGAAGTGAATCATTCTCAAGCTCCATTTCTAGTACTGACTGTGCACATCCCGTTTCAAAAGAAGCATCAGAGATATTTAATAAGCAAGAAAATGTAAAGGAGCTGTCTGGAGAAATCACCAAGGGACCTGCTGCGTCTGCAAATAATGAATCAGGGTCTTCTCCTTGGTTTTCAGGAAAGCAATCTCAAGGCCCAATATCAAGATTAAGAGAAACAGAGAATGGAAATAATAATAACGGCCAGTCACAAGTGCATTCTCTTACTGTTTGCAATTTTGGATATGATGAGGTGACAACTACATCTTATGTCAATAAGTTGATTGAAGATCTTCACAGTCAATCTGATGAAGTGCAAACTAAGGCTGCAGAAGAATTGCGGCTTCTTTCAAAGCACAATGTGGAAAACCGAATCATAATAGGGAAGTGTGGGGCTATCACACCTTTACTTTCACTACTTGATTCAGAAGTGAAGATAACACAAGAGCATGCTGTGACGGCTTTGCTGAATTTGTCCATTAGTGAAGATAACAAGGCCTTGATTGCGGAAGCTGGAGCAATTGAACCACTTATCCATGTTCTGAAAACAGGAAATGATGGAGCCAAGGAGAATTCTGCAGCAGCTCTGTTTAGCCTTTCTGAGGCTGTTCTTCTTGTCCCTCTCAGGGCACAACAACTTCTAAGCCATTTTCGTTATCAACGGGAAGGAGCTAATGGGAAGGGAAAAGCTTGA 1971 0.3942 MLASNPFIARDINIVICFTKPGKPDTASVKCLVNSISRFIHLVSCQTMKPMPFQKNYNHMTGVLKRLKPVLDDVIDCKSYLDENLCKECEDLDMAVNEAREFLENWSPKRSRILSVLRSGSLLMKIQISSVEICHLIFRSLQSPPPTSVLASLEELKCLKKEPATGYIEEALTSQRENIEPHNENLKKIIELLGLTANLELMKESIAVEKERLSTEVKKMKAELDEINTIVGLICSLRDYAIKFVHPEVKSGISIPSYFICPLSLELMMDPVIVASGQTYDRTSIQKWLDHGLTVCPKTRQRLAHTNLIPNYTVKAMVGNWCEENNAELSSYSESNNMKTSLDHLLPQDLARSCSFGSVHSSNSTSRSSLQTGNALEKQKGDISSRLSGESNGCQSVEIEKFEQQTPAPSYIYSRSESFSSSISSTDCAHPVSKEASEIFNKQENVKELSGEITKGPAASANNESGSSPWFSGKQSQGPISRLRETENGNNNNGQSQVHSLTVCNFGYDEVTTTSYVNKLIEDLHSQSDEVQTKAAEELRLLSKHNVENRIIIGKCGAITPLLSLLDSEVKITQEHAVTALLNLSISEDNKALIAEAGAIEPLIHVLKTGNDGAKENSAAALFSLSEAVLLVPLRAQQLLSHFRYQREGANGKGKA 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1233 656 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 557 599 IPR000225 GO:0005515
Lele06g1233 656 MobiDBLite consensus disorder prediction 359 391 - -
Lele06g1233 656 MobiDBLite consensus disorder prediction 447 496 - -
Lele06g1233 656 SUPERFAMILY ARM repeat 507 627 IPR016024 -
Lele06g1233 656 MobiDBLite consensus disorder prediction 456 496 - -
Lele06g1233 656 CDD RING-Ubox_PUB 259 301 IPR045210 -
Lele06g1233 656 Gene3D - 507 639 IPR011989 -
Lele06g1233 656 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 329 IPR013083 -
Lele06g1233 656 PANTHER U BOX DOMAIN-CONTAINING 52 626 - -
Lele06g1233 656 SMART Ubox_2 258 321 IPR003613 GO:0004842|GO:0016567
Lele06g1233 656 FunFam RING-type E3 ubiquitin transferase 255 327 - -
Lele06g1233 656 ProSiteProfiles U-box domain profile. 254 328 IPR003613 GO:0004842|GO:0016567
Lele06g1233 656 Pfam Armadillo/beta-catenin-like repeat 546 585 IPR000225 GO:0005515
Lele06g1233 656 Pfam Armadillo/beta-catenin-like repeat 587 626 IPR000225 GO:0005515
Lele06g1233 656 SMART arm_5 587 627 IPR000225 GO:0005515
Lele06g1233 656 SMART arm_5 546 586 IPR000225 GO:0005515
Lele06g1233 656 Coils Coil 203 230 - -
Lele06g1233 656 Pfam U-box domain 255 326 IPR003613 GO:0004842|GO:0016567
Lele06g1233 656 SUPERFAMILY RING/U-box 253 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1233 Lele-ChrLele06 7811593 7814848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1233 478 656 U-box Gene Family AT3G54790 28.230 1.03e-07 53.5