Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1228 ATGGGTCTGAGAGACATTGGAGCTTCACTGCCTCCTGGGTTTCGGTTTCATCCGAGTGATGAAGAATTGGTGTTTCATTATCTCTACAAAAAGATCTCAAACGAGGAAGCTCTCAAGGGCACTTTGGTCGAAATCGACTTGCATACATGCGAACCCTGGCAACTTCCTGAGGTGGCTAAGCTGAACGCGAATGAGTGGTACTTCTTCAGCTTCCGTGACCGGAAATACACGACGGGGTTCAGGACCAATAGGGCGACGACATCTGGATATTGGAAGGCAACGGGGAAGGATCGGACGGTGGTGGATCCGATCACGAGGGAGGTTGTAGGGATGAGGAAGACGTTGGTGTTCTACAGGAACAGGGCTCCCAATGGTATAAAAACGGGTTGGATCATGCATGAGTTCCGCTTGGAGACCCCACACATGCCCCCTAAGGAGGACTGGGTTTTGTGTAGAGTATTTCACAAGAACAAATCAGATGACAACAACAACGTTAACGACGATATCATGAATGCCAAACTCATGTTGAACTCAATTTCATCTCCTTCCCTTACTCTGGCTTCTTCATCTTCCCCAGCCAACCATAATACCTTCCCTCTCGTCTCTTACAACCAACTTTCCTCTTCCTCCTTCATTAACCACCACGACCATCATCATTCTAATAATTCTCTCGTCAACTTTCTTCAATTTCCTCGGGAAACAAACACCGCCGACACCAGCACCGTTACTCACGACCAGATTAGCCCCAGAGGCGGCAGGGATGATGGCAGCTATGGCTTCTTCTGGGACATGGGCCTAGAAGATAACATGTACAGCAGCTTTCACAATGGCGTCGACGCTATGAGGTCCTTCAAGGCCGATAATAATACTAATAATAGCATGATCTTGTCATGA 894 0.4799 MGLRDIGASLPPGFRFHPSDEELVFHYLYKKISNEEALKGTLVEIDLHTCEPWQLPEVAKLNANEWYFFSFRDRKYTTGFRTNRATTSGYWKATGKDRTVVDPITREVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKNKSDDNNNVNDDIMNAKLMLNSISSPSLTLASSSSPANHNTFPLVSYNQLSSSSFINHHDHHHSNNSLVNFLQFPRETNTADTSTVTHDQISPRGGRDDGSYGFFWDMGLEDNMYSSFHNGVDAMRSFKADNNTNNSMILS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1228 297 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 218 - -
Lele06g1228 297 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Lele06g1228 297 SUPERFAMILY NAC domain 8 157 IPR036093 GO:0003677|GO:0006355
Lele06g1228 297 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Lele06g1228 297 Gene3D NAC domain 19 161 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1228 Lele-ChrLele06 7768346 7771728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1228 6 157 NAC Transcription Factor Family AT1G56010 58.125 3.70e-64 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele06g1228 NAM 2.2e-37 No_clan