Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1205 ATGGAAGCACGCCCTACTTTTTCCGTTGAAAGATCAATTGCAAAGCAACTCAGTAGCATGGGAGTGTCTGGAGCACTGTCTTCATCCCTGCCTGTCCACCCAACACCCATAGAAGAGACATATTCCAAGCTACCTGATTCTCACCAGGCTTTTGTGGAAAAAGAGCGCATGGCAAGACCTCTTACTCATTCAAGTCATTCCAGCGGAGCAGTTGGGCACATGTTTTCATCATCCCCTGGATATTCTACTGATCTCCATCACTCATCCCTTTCACCTCATGGAAAACACTCAAGAAATCCGCATTTTATTTCACTGTCTTCAAGTAAAATGGCATCATTGCCATTGTCATATTCTTCAAGTACTGGACCACTGGCTTCTACAACATCATGTTGTTATTCCAAAGCAAGTAATGGATCATGGGCTACAGATTCCTTGCCAAACATTCTTGATTTTCCTGTAAATACTTCCATTAAGGATAGTCAAGTAGAAAGCAGTGCCTGCAATATAATGGCACCTGATGAGTATGGTAAGAAGAATGATTGGCAGGAGTGGGCTGACCAACTGATCAATGATGATGATGCATTGACTGCTAACTGGAATGACATTCTTGTTGACCCCAGCATTCATGATCTTGAACCAAACGTGTCATGCAAGACTTCAAAATCAACTTCACAACTGCCAGGGCTGCAGTCCCAAGGTCCCCAGCATCTTCCAGCTTCATCGGGAGAAAAAAATGTTAGTGCTCCACCCTCTTCCTCGGCAAATTCTGCTCCTGCCAAGCCACGAATGCGTTGGACACCAGAGCTTCACGAGGCCTTTGTGGAGGCTGTCAACCAACTTGGTGGGAGTGAAAGAGCAACCCCTAAGGGTGTGCTGAAGCTTATGAAAGTTGAAGGCTTAACAATATATCACATTAAAAGCCACTTGCAGAAATATAGGACAGCTAGATATAGACTGGAGTCATCTGAAGGATCCTCGGAGAAAATGTTGACTCCAATGGAAGAGATGTCTTCTCTAGACTTAAAAACTGGCATTGAGCTCACTGAAGCTCTGAGATTGCAGATGGAGGTTCAGAAGCGCCTGCATGAACAACTAGAGATTCAAAGGAATTTACAGTTGCGGATTGAAGAACAAGGAAGGTACCTCCAAATGATGTTTGAGCAGCAATGCAAATCTGGCGTTGAAAAGTTTAAGGCAGCACCATCTGCCATGGAGGATCCCTCTGGAGTGTCGTCAGATGCTATTAAAGATTCTTCTGCCAAAACTGAAGTGGATGTCTCCCTAGTGGACCATTGCAAGTCAGGAACTGAACAAGATAATAGCAATGCCACAGTTGAAGAAAGCTCACCGAAAGTTGTTGAGAAGCAAAATGCTCCTGAAAATCAAACATCTGATAATCCTAAGCCACATACGACTGAAGATGATGCTAATGCTCAACCGTCAAAGCGTCAAAGGACAGATGAATAA 1467 0.441 MEARPTFSVERSIAKQLSSMGVSGALSSSLPVHPTPIEETYSKLPDSHQAFVEKERMARPLTHSSHSSGAVGHMFSSSPGYSTDLHHSSLSPHGKHSRNPHFISLSSSKMASLPLSYSSSTGPLASTTSCCYSKASNGSWATDSLPNILDFPVNTSIKDSQVESSACNIMAPDEYGKKNDWQEWADQLINDDDALTANWNDILVDPSIHDLEPNVSCKTSKSTSQLPGLQSQGPQHLPASSGEKNVSAPPSSSANSAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHIKSHLQKYRTARYRLESSEGSSEKMLTPMEEMSSLDLKTGIELTEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEQQCKSGVEKFKAAPSAMEDPSGVSSDAIKDSSAKTEVDVSLVDHCKSGTEQDNSNATVEESSPKVVEKQNAPENQTSDNPKPHTTEDDANAQPSKRQRTDE 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1205 488 Coils Coil 348 368 - -
Lele06g1205 488 MobiDBLite consensus disorder prediction 398 488 - -
Lele06g1205 488 MobiDBLite consensus disorder prediction 433 466 - -
Lele06g1205 488 MobiDBLite consensus disorder prediction 418 432 - -
Lele06g1205 488 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 257 317 IPR017930 -
Lele06g1205 488 MobiDBLite consensus disorder prediction 467 488 - -
Lele06g1205 488 FunFam Myb family transcription factor 259 317 - -
Lele06g1205 488 SUPERFAMILY Homeodomain-like 258 314 IPR009057 -
Lele06g1205 488 Pfam Myb-like DNA-binding domain 262 313 IPR001005 -
Lele06g1205 488 MobiDBLite consensus disorder prediction 214 259 - -
Lele06g1205 488 Gene3D - 259 318 - -
Lele06g1205 488 MobiDBLite consensus disorder prediction 214 262 - -
Lele06g1205 488 MobiDBLite consensus disorder prediction 82 101 - -
Lele06g1205 488 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 238 469 IPR044848 GO:0003700
Lele06g1205 488 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 260 314 IPR006447 GO:0003677
Lele06g1205 488 Pfam MYB-CC type transfactor, LHEQLE motif 345 392 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1205 Lele-ChrLele06 7580779 7585524 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1205 1 402 G2-like Transcription Factor Family AT4G28610 49.398 6.43e-104 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele06g1205 Myb_DNA-binding 8.6e-09 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1205 06 7580779 7585524 Lele06g1205 06 7580779 7585524 ECH
Lele05g1343 05 8432276 8438837 Lele06g1205 06 7580779 7585524 ECH
Lele06g1205 06 7580779 7585524 Lele07g1400 07 8511307 8515549 hybridization