Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1200 ATGGCACCCAATCCAAGGGTTGCTGCAGCCTATCGTGCAATGACTGTTCTTGGCATTAATGAAGCAAAAGTCAAACCAGTATTGAAGCAACTTCTTAAATTGTATGATAAGAACTGGGAACTTATTGAACAAGAGAACTACAGAGCTCTTGCAGATGCTATATTTGAGCAGGATGAAAAAGAGTTTATGCATCACTTTCTTGATCTAACATCTATAGCTGTTGAAATGTGTTATGGCTTGTCAATCAATCAGGAAGGACAAATGGAGGATGAAGAAGCTCAGATGCAGGATGAACCAGTGCGACCTTTGAAGAGGTTGCATTTAAGGGGCCAAGAGAATCAGGCTTCACATACTCTGAGTATTTGTGGAACCAGCTCAGCTGCCTCCCCATCTAAAATGCCTAAAGCAGAAGGTGATGAATTGCCTGAAAGTTGTCCCAGCCAGCAGATTCAATACAATGCAATGTCGCCTCAGTCCAATAGAAATGCAGGGACTGAAGTTCGCCCTGTTCCAGTGCGAGATAGTTTTGTTGACAAGGGAAAGCAACCTTTATCACCTCAAGCTGCTCCTGGAGGAAGAAGACTTGGATCTGAAATAGCATCTCCATCAGTGCCATTTAAAGAACCTATAGCTGAACAGAGAATTGTGTCATTACAGAAAAACCAATTGCCCTATACTCATGCGTTAGTCGAGCCTAAAGATGAGCCTATTGATGAACTGGTAGATTATGATGCTCCTATTGCAACAATTCATCCTGAACTGCCTAGTGGAAGAGACCCTCCAGTGCAGCATGATGCAACTAGAAAACAAGACGGGAGTGGTCCTTTAATGTCAAAATGCAGAGACGAAGAAGGTAGAGGGGAAGGTATTCAGGATTCATCAGATGAAGCAAAATGTCCTACCATAGAGATAGCCTCCTCAACATCAGGAGAGGTAAAAATTACTATGAGCTGCAGTTCAGGTCTTGGGAGATCAGATTTTCGTTTGCCTAGTCAAGATCAACTTTTAAAAATGATGGAGGATAAATGTATGCAATCATATAATATCACTGACCCAAATTTTTCTATCATGAAACTGTTGAGAGATATGTGTGACTGCGTGTTGGAATTCAGAACTGATTCAAATGATGGCTCACAAGAAGGATCTGAAATGATGAGATCGAGTCTAAATGTAGTGAAGGAATCTAGGGCATGTAATTCTCTGATTATCAGAGGCAATACAGAAGATTTAGGAGTGCATGCTGGCACGTCAAATGGATCAATCAACATTCAGTCCTCTTCTGCACTGGCTACTTCTCGCATTTCCACTTCTCCCCAGCTTTTGAGTGGTATGAATGATGCTGTACTAGTCACCAATAAACCCCGAAGTGATTTACCATATTGTGATGACGGAAAGAGGCTGAAGGATCCTATATCTCCACATTCGGGTAGTTTGGTTGTTGTTCAACAGCATCAGCTTACTCCCGCTGATCTAAGGTCTATTCATGGTGCTGAAGACCTTTCAAAAGGAGAAGAGAATCTCAGAATTACATGGGTGAACGAAATAACGAATGATTTCCCTCCACCTTTTCACTATCTGCACCAAAGCATTGGTTTCAGAGATGCTTATGTTAACTGGTGTCTTTCAAACATCAAGTGTGAGGATTACTGTGCAACTTGTTTGGGCGATTGTCTTCTGTCCGGAACATCTTGTGTTTGTGCAAATAAAATTGAGGATGGATGTGCATACACATCCGAAGGGCTACTGAAGGAAAAGTTCTTGGAAGAGTGTATTGCCATTACCCGCAATCCTCAACAACATCAGTTCTATTGTAAAATCTGCCCCCTTGAAAGAGCAAAGAACGATAATTGCTTAGAACCATGTAAAGGACACTTAAAGAGAAAGTTTATCAAAGAATGTTGGGTAAAATGTGGCTGTGTGAAACAGTGTGGCAATAGGGTTGTCCAACGAGGAATAACGTTGAAATTGCAGGTGTTTTTTACTTCAGAAGGAAAAGGATGGGGTCTTCGTACCTTGGAGGAGCTTCCAAAAGGTGCATTTGTGTGTGAGTTTGTGGGAGAAATATTAACCATCAAAGAGTTTCATGAGAGAAACATGCAATGTGCTCAAAATGGAACGTACACATACCCAGTCCTATTAGATGCAGATTGGGACTCTGGAGTTATAAATGATAAAGAAGCGCTCTGCTTGGATGCAGCATCTTACGGGAATATTGCTAGGTTTATAAACCACAGAAAAGTAGCTGCACTGGAAGAGCTAACTTGGGATTATGGTATTGACTTTGATGACAATGAGGGTCCTGTTAAGCCATTCTCTTGCAGATGTGGCAGCAAGTTCTGCAGGAAGATGAAGCGATTAAGTACCAAGTAA 2370 0.416 MAPNPRVAAAYRAMTVLGINEAKVKPVLKQLLKLYDKNWELIEQENYRALADAIFEQDEKEFMHHFLDLTSIAVEMCYGLSINQEGQMEDEEAQMQDEPVRPLKRLHLRGQENQASHTLSICGTSSAASPSKMPKAEGDELPESCPSQQIQYNAMSPQSNRNAGTEVRPVPVRDSFVDKGKQPLSPQAAPGGRRLGSEIASPSVPFKEPIAEQRIVSLQKNQLPYTHALVEPKDEPIDELVDYDAPIATIHPELPSGRDPPVQHDATRKQDGSGPLMSKCRDEEGRGEGIQDSSDEAKCPTIEIASSTSGEVKITMSCSSGLGRSDFRLPSQDQLLKMMEDKCMQSYNITDPNFSIMKLLRDMCDCVLEFRTDSNDGSQEGSEMMRSSLNVVKESRACNSLIIRGNTEDLGVHAGTSNGSINIQSSSALATSRISTSPQLLSGMNDAVLVTNKPRSDLPYCDDGKRLKDPISPHSGSLVVVQQHQLTPADLRSIHGAEDLSKGEENLRITWVNEITNDFPPPFHYLHQSIGFRDAYVNWCLSNIKCEDYCATCLGDCLLSGTSCVCANKIEDGCAYTSEGLLKEKFLEECIAITRNPQQHQFYCKICPLERAKNDNCLEPCKGHLKRKFIKECWVKCGCVKQCGNRVVQRGITLKLQVFFTSEGKGWGLRTLEELPKGAFVCEFVGEILTIKEFHERNMQCAQNGTYTYPVLLDADWDSGVINDKEALCLDAASYGNIARFINHRKVAALEELTWDYGIDFDDNEGPVKPFSCRCGSKFCRKMKRLSTK 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1200 789 Pfam SET domain 666 744 IPR001214 GO:0005515
Lele06g1200 789 SMART set_7 654 764 IPR001214 GO:0005515
Lele06g1200 789 MobiDBLite consensus disorder prediction 114 131 - -
Lele06g1200 789 Pfam Pre-SET motif 501 646 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lele06g1200 789 Pfam Ubiquitin-binding WIYLD domain 6 60 IPR018848 GO:0018024
Lele06g1200 789 Gene3D SET domain 495 788 IPR046341 -
Lele06g1200 789 SUPERFAMILY SET domain 506 782 IPR046341 -
Lele06g1200 789 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 745 786 - -
Lele06g1200 789 MobiDBLite consensus disorder prediction 114 144 - -
Lele06g1200 789 SMART preset_2 497 638 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lele06g1200 789 ProSiteProfiles SET domain profile. 654 789 IPR001214 GO:0005515
Lele06g1200 789 MobiDBLite consensus disorder prediction 251 299 - -
Lele06g1200 789 MobiDBLite consensus disorder prediction 275 293 - -
Lele06g1200 789 Gene3D - 1 60 IPR043017 -
Lele06g1200 789 MobiDBLite consensus disorder prediction 174 195 - -
Lele06g1200 789 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 786 IPR025776 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1200 Lele-ChrLele06 7561380 7565907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1200 630 783 C2H2 Transcription Factor Family AT2G23740 36.702 2.34e-22 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lele06g1200 Pre-SET 1.9e-13 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1200 06 7561380 7565907 Lele06g1200 06 7561380 7565907 ECH
Lele06g1200 06 7561380 7565907 Lele07g1396 07 8494398 8499098 hybridization
Lele06g1200 06 7561380 7565907 Lele08g1197 08 7556326 7560283 hybridization