Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1194 ATGGAATCGCGGACGCCGAAGACGCCCATGAAGGATTCTGAAGTTATAGTCTGTCACGGTGAGCTGTCAACATTGAATTGGAAGCCAGGTGTAGGGCCCACAACCATATTGCGAGCGATGCAGGGTGGTTCTACAGGTGGTTCGATGTTAACGGTGTCAAAGGAAGATAATTTGGTCATGTCTTCGGAGGATTCTTCATGTCCAGATGAATCTGAGCTGGATTTGGGTCTTGGCTTAAGCATTCTTTCTCGTCCTGGGCTCAAGTCCCAACCACCGTCCACGAATCAATATGCTAGATTATTAACCGCTAAAGATTTTCCTTCTATGGTTTCTTCTCATACTGCAACTTCATTAGCTTCATCAACCTCCTCATCTTCTTCTTCCTCCTCCTCTCCTTCCTCTGTCACCAGGCCTAACGCCACTGTTGGAACCAAGAGAACTGCCGATTATGTTGTTGCTACTAATGGCCCCAGTCAGGTCGTAGGATGGCCTCCCATTGGAGCATATCGAATGAACAGCTTTAACCATCATGCAAAGTCACCTGCCACTAATGTGTTCGACTCAGTGACTGAGAAAGGTAAGAGCAATAATACAGAGGCAAGGAAGAGTACTGATTCCGGCATCGATAATAGCAATGTTAGTGCCAAAGGTAAAGGGCACCTGAAGAGTTCCTGGTTTGTGAAGGTAAATATGGACGGGTTACCGATTGGAAGGAAGGTTGATTTGAGCCCTCATACTTCCTATGAGAGCTTAGCATTTGCTTTGGAAGAGATGTTCGATGAACACGCTGCAGCTGTTTCTAGTGAAATAGGATCAAATGGGGAAGAACATGGCGTTATAGTCGGAGCAGAAAGACGGTCAAAATTGCTGGATGGATCTTCCAAGTTTGTACTTACTTATGAAGACAAGGATGAAGATTGGATGCTTGTTGGAGATGTACCTTGGGGGATGTTTCTAAGCTCTGTGAGGAGGCTAAGAATCATGAGAACATCTGAGGGTACTGGACTGGCACCAAAGTGTGAAGAAAAGAACAGCAGACAGAGAAGTTAG 1050 0.4571 MESRTPKTPMKDSEVIVCHGELSTLNWKPGVGPTTILRAMQGGSTGGSMLTVSKEDNLVMSSEDSSCPDESELDLGLGLSILSRPGLKSQPPSTNQYARLLTAKDFPSMVSSHTATSLASSTSSSSSSSSSPSSVTRPNATVGTKRTADYVVATNGPSQVVGWPPIGAYRMNSFNHHAKSPATNVFDSVTEKGKSNNTEARKSTDSGIDNSNVSAKGKGHLKSSWFVKVNMDGLPIGRKVDLSPHTSYESLAFALEEMFDEHAAAVSSEIGSNGEEHGVIVGAERRSKLLDGSSKFVLTYEDKDEDWMLVGDVPWGMFLSSVRRLRIMRTSEGTGLAPKCEEKNSRQRS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1194 349 Gene3D - 220 342 - -
Lele06g1194 349 MobiDBLite consensus disorder prediction 117 142 - -
Lele06g1194 349 SUPERFAMILY CAD & PB1 domains 221 328 - -
Lele06g1194 349 Pfam AUX/IAA family 89 339 IPR033389 -
Lele06g1194 349 MobiDBLite consensus disorder prediction 200 215 - -
Lele06g1194 349 MobiDBLite consensus disorder prediction 180 215 - -
Lele06g1194 349 ProSiteProfiles PB1 domain profile. 224 332 IPR000270 GO:0005515
Lele06g1194 349 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 71 332 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1194 Lele-ChrLele06 7523029 7526549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1194 228 339 B3 DNA Binding Superfamily AT1G59750 33.036 3.26e-12 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele06g1194 AUX_IAA 1.7e-58 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2358 13 29319269 29324212 Lele06g1194 06 7523029 7526549 CCT
Lele14g2290 14 27655012 27659773 Lele06g1194 06 7523029 7526549 CCT
Lele15g0060 15 358037 363837 Lele06g1194 06 7523029 7526549 CCT
Lele16g0064 16 399884 401718 Lele06g1194 06 7523029 7526549 CCT
Lele06g1194 06 7523029 7526549 Lele06g1194 06 7523029 7526549 ECH
Lele06g1194 06 7523029 7526549 Lele07g1388 07 8443426 8448133 hybridization
Lele06g1194 06 7523029 7526549 Lele08g1188 08 7514363 7517875 hybridization