Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1190 ATGGAGGACGATGCTGATATATACGATGGTGTTAGAGCTCAATTCCCTCTTAGTTTTGGAAAGCAGTCCAAGTCGCAAACCCCTCTTGAAGCCATCCACAATGCCACTCGTCGTTCCAGTTCCAATCTCAGCTCGAATCCCTCTGCCACGATCACCAGCGACACCACCAATGGCCTCCCTTCTATCTCCTCCTCTTCCAAGGCCTGGCTTCATTCCCTCCGTGGCTCCAAAAACCCTAACCCTGATTCTACCGCCGATCGTGGTGGTAGTGCTTCCACTATTGGGCCCTCTCGGCCACCTCTGCCGGTGGAATCTGATGAGGACGGCGGTGTTATGGTGGGACCGCCTCGGCCGCCTGAGGGAGAAGAGGATGATGGTACGATGATTGGGCCTCCTCCACCATCTCTTGGTTTAGGTTCCGGGGAAGAAGGGGATGACGATGGGGAGATGATTGGCCCGCCAAGACCTCCTCCTGGCTCGAATTTGGGTTCCTCGAGTTCTGAGGATGATTCAGACGAAGAGGAGGTGGGGAATCGGTTACGAATTCCTCTGAGCAACGAAATTGTTCTCAAGGGCCACACTAAGGTTGTGTCGGCTCTTGCTGTGGATCACTCTGGGTCTAGAGTACTTTCTGGAAGTTATGACTATACAGTGCGTATGTATGACTTTCAAGGAATGAGTTCGCGGTTGGAATCATTTCGACAATTGGAGCCATTTGAAGGTCATCAAGTTCGCAACCTAAGCTGGAGTCCAAGTGCAGATCGCTTTCTGTGTGTGACAGGGTCAGCTCAAGCAAAGATCTATGATCGAGATGGGCTTACTTTGGGAGAGTTTGTGAAGGGGGACATGTATATCCGTGATCTAAAAAATACTAAAGGGCACATATCTGGATTGACATGGGGAGAATGGCACCCAAAAACCAAGGAAACAATTTTAACATCATCAGAGGATGGATCACTGCGCATATGGGATGTAAATGACTTCAAAAGTCAGAAGCAGGTTATCAAACCAAAGCTTGCTAGACCTGGAAGAGTTCCTGTCACCACATGTGCATGGGATTGTGATGGTAAATGCATAGCTGGTGGTATTGGAGATGGTTCTATACAGATTTGGAGTATGAAGCCTGGATGGGGAAGTAGGCCAGATACATGTATTGACAAAGGGCATTCTGATGATATTACTGGTCTGAAATTTTCTAGTGATGGGAGAGTTTTACTGTCAAGAAGTTTTGATGGTTCATTGAAGGTCTGGGACTTGCGCAAAGTAAAGGAACCCCTAAAGGTATTTGAAGGTCTTCCGAATAACTACGGGCAAACAAATATCGCTTTTAGCCCTGATGAACGACTTTTTCTTACTGGAACATCTGTTGAAAGAGAGAGCTCAAGTGGAGGTTTATTGTGCTTTTATGATCGCACAAACCTTGAGCTTGTTTCAAGAGTTGGTATATCGCCCACTTGTAGTGTTGTGCAATGTGCTTGGCATCCTAAACTGAATCAGATCTTTGCGACGGTTGGTGACAAAAGCCTAGGAGGTACTCACGTACTATATGACCCAACCCTCAGTGAGAGAGGAGCTCTCGTTTGCGTTGCACGTGCACCAAGGAAAAAATCCATTGATGATTTTGAGGCAAAACCGGTTGTTCACAATCCGCATGCCTTACCACTATTTAGAGATCAGCCAAGCCGTAAACGTCAGCGAGAGAAAATACTGAAGGATCCAATGAAGTCCCATAAACCTGAACTTCCCATAACAGGGCCTGGTTTTGGTGGGCGAGTTGGTGCAAGTCAAGGAAGTTTGCTGACTCAATATCTTCTGAAGCAAGGGGGTATGATTAAGGAGACGTGGATGGAGGAGGATCCGAGAGAAGCTATCCTGAAATATGCTGATGCTGCAGCAAATGATCCGAAATTCATTGCTCCAGCATATGCAAAAACCCAGCCTGCGCCTGTTTTTCAAACTTCAGATTCTGACGAGGAAGATAAACAGTAG 1989 0.4716 MEDDADIYDGVRAQFPLSFGKQSKSQTPLEAIHNATRRSSSNLSSNPSATITSDTTNGLPSISSSSKAWLHSLRGSKNPNPDSTADRGGSASTIGPSRPPLPVESDEDGGVMVGPPRPPEGEEDDGTMIGPPPPSLGLGSGEEGDDDGEMIGPPRPPPGSNLGSSSSEDDSDEEEVGNRLRIPLSNEIVLKGHTKVVSALAVDHSGSRVLSGSYDYTVRMYDFQGMSSRLESFRQLEPFEGHQVRNLSWSPSADRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHISGLTWGEWHPKTKETILTSSEDGSLRIWDVNDFKSQKQVIKPKLARPGRVPVTTCAWDCDGKCIAGGIGDGSIQIWSMKPGWGSRPDTCIDKGHSDDITGLKFSSDGRVLLSRSFDGSLKVWDLRKVKEPLKVFEGLPNNYGQTNIAFSPDERLFLTGTSVERESSSGGLLCFYDRTNLELVSRVGISPTCSVVQCAWHPKLNQIFATVGDKSLGGTHVLYDPTLSERGALVCVARAPRKKSIDDFEAKPVVHNPHALPLFRDQPSRKRQREKILKDPMKSHKPELPITGPGFGGRVGASQGSLLTQYLLKQGGMIKETWMEEDPREAILKYADAAANDPKFIAPAYAKTQPAPVFQTSDSDEEDKQ 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1190 662 FunFam WD repeat-containing protein 70 279 521 - -
Lele06g1190 662 ProSiteProfiles Trp-Asp (WD) repeats profile. 291 333 IPR001680 GO:0005515
Lele06g1190 662 SUPERFAMILY WD40 repeat-like 178 507 IPR036322 GO:0005515
Lele06g1190 662 CDD WD40 189 509 - -
Lele06g1190 662 FunFam Nucleotide binding protein 130 278 - -
Lele06g1190 662 MobiDBLite consensus disorder prediction 19 91 - -
Lele06g1190 662 SMART WD40_4 422 470 IPR001680 GO:0005515
Lele06g1190 662 SMART WD40_4 232 269 IPR001680 GO:0005515
Lele06g1190 662 SMART WD40_4 281 324 IPR001680 GO:0005515
Lele06g1190 662 SMART WD40_4 378 418 IPR001680 GO:0005515
Lele06g1190 662 SMART WD40_4 183 222 IPR001680 GO:0005515
Lele06g1190 662 SMART WD40_4 328 372 IPR001680 GO:0005515
Lele06g1190 662 MobiDBLite consensus disorder prediction 641 662 - -
Lele06g1190 662 Pfam WD domain, G-beta repeat 188 222 IPR001680 GO:0005515
Lele06g1190 662 Pfam WD domain, G-beta repeat 346 372 IPR001680 GO:0005515
Lele06g1190 662 Pfam WD domain, G-beta repeat 387 418 IPR001680 GO:0005515
Lele06g1190 662 Pfam WD domain, G-beta repeat 289 324 IPR001680 GO:0005515
Lele06g1190 662 ProSitePatterns Trp-Asp (WD) repeats signature. 311 325 IPR019775 -
Lele06g1190 662 PANTHER GASTRULATION DEFECTIVE PROTEIN 1-RELATED 9 661 - -
Lele06g1190 662 MobiDBLite consensus disorder prediction 19 176 - -
Lele06g1190 662 ProSiteProfiles Trp-Asp (WD) repeats profile. 190 231 IPR001680 GO:0005515
Lele06g1190 662 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 386 420 - -
Lele06g1190 662 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 190 224 - -
Lele06g1190 662 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 291 326 - -
Lele06g1190 662 PRINTS G protein beta WD-40 repeat signature 405 419 IPR020472 -
Lele06g1190 662 PRINTS G protein beta WD-40 repeat signature 311 325 IPR020472 -
Lele06g1190 662 PRINTS G protein beta WD-40 repeat signature 359 373 IPR020472 -
Lele06g1190 662 ProSiteProfiles Trp-Asp (WD) repeats profile. 386 427 IPR001680 GO:0005515
Lele06g1190 662 Gene3D - 157 278 IPR015943 GO:0005515
Lele06g1190 662 Gene3D - 279 520 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1190 Lele-ChrLele06 7481603 7484808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1190 318 485 Miscellaneous Gene Families AT5G08390 26.744 2.22e-07 52.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1190 06 7481603 7484808 Lele06g1190 06 7481603 7484808 ECH
Lele06g1190 06 7481603 7484808 Lele07g1382 07 8403837 8407011 hybridization
Lele06g1190 06 7481603 7484808 Lele08g1184 08 7476756 7479982 hybridization