Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1172 ATGGATGATGATGAATATCCGATACCCACGTCTTCTGGGGTGCACCGCCAAAAGAGGCCCTCCGTGCCTGAGGACGATATCATGGAGCTTTTGTGGCAGAACGGCCAGGTCGTGATGCAGAGCCAGAATCAACGGCATCAGAGGAAACCGCCGCCAGAGAGGTACGCCGACAGCGTAATTCCAGCTGGTCCATCGACGGCAAGGGAGATTCGACCCTCGCAACAATTAGAACAACACTATCAGAATCAACATATCTTCATGCAAGAAGATGAAATGATTTCCTGGCTTCACTATCCCATGCAATGGAACTCCGGCAACCATCGAGGGAGATCGCCGGCTGAAGATCGGAAACGGAAGGGCCGGGAGCCCGATGAATCGGATTGCCACAGCGAGGAAGTCTACGTTGAATCTGCTGAAGCCAAGAAACAAAATTGTGGATCATCATCAACTAAAAGATCACGTGCTGCAGAGGTTCATAATCTCTCAGAGAGGAGGCGTCGAGATAGGATTAATGAAAAGATGAGAGCCTTGCAAGAACTTATCCCACGCTGCAATAAGTCCGACAAAGCTTCAATGCTGGATGAAGCAATTGAATACTTGAAGTCACTGCAGTTGCAAGTGCAGATGATGTCCATGGGATGTGGGATGTTACCAATGATGTTTCCTGGAATCCAACAGTATATGCCACCAATGGGAATGGGAATGGGCATGGGCATGGAAATAGGAATGAATAGGCCTCTTATGCCATTTCCCAATATGTTAGCTGCTTCTGCTATGCCACCAGCGGCCGCAGCTCAATTGGGACTAAGGTTCCCTATGCCCCCTTTCCAAATGCCTCATGCCCCTCAGCCTGATTCATCTAGAATGCAAGCAGCAGCTCCAAGTCAACCAGAAAACAATACGCTTCCTTCTATTGTCACACCTGATCCCAATCACTCACGGATCCCAAACTTTAATGATCCTTATCAGCAATGCCTTGGTCCCCACCAGATGCATCTACAGTTCATGCAGAATCAGACACTGAACATCCCAACTGTCAGCAAACCAAGTACCAGTAAGAGCCATGAAAGTGCAGAAAATAATCAACCAGGTCAACCAGAGTAA 1104 0.4837 MDDDEYPIPTSSGVHRQKRPSVPEDDIMELLWQNGQVVMQSQNQRHQRKPPPERYADSVIPAGPSTAREIRPSQQLEQHYQNQHIFMQEDEMISWLHYPMQWNSGNHRGRSPAEDRKRKGREPDESDCHSEEVYVESAEAKKQNCGSSSTKRSRAAEVHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMLPMMFPGIQQYMPPMGMGMGMGMEIGMNRPLMPFPNMLAASAMPPAAAAQLGLRFPMPPFQMPHAPQPDSSRMQAAAPSQPENNTLPSIVTPDPNHSRIPNFNDPYQQCLGPHQMHLQFMQNQTLNIPTVSKPSTSKSHESAENNQPGQPE 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1172 367 MobiDBLite consensus disorder prediction 141 155 - -
Lele06g1172 367 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 233 IPR036638 GO:0046983
Lele06g1172 367 MobiDBLite consensus disorder prediction 288 313 - -
Lele06g1172 367 FunFam Basic helix-loop-helix transcription factor 149 212 - -
Lele06g1172 367 SMART finulus 160 209 IPR011598 GO:0046983
Lele06g1172 367 Gene3D - 149 212 IPR036638 GO:0046983
Lele06g1172 367 MobiDBLite consensus disorder prediction 1 22 - -
Lele06g1172 367 Pfam Helix-loop-helix DNA-binding domain 158 204 IPR011598 GO:0046983
Lele06g1172 367 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 28 352 IPR031066 -
Lele06g1172 367 MobiDBLite consensus disorder prediction 104 162 - -
Lele06g1172 367 MobiDBLite consensus disorder prediction 109 138 - -
Lele06g1172 367 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 154 203 IPR011598 GO:0046983
Lele06g1172 367 CDD bHLH_AtPIF_like 154 216 - -
Lele06g1172 367 MobiDBLite consensus disorder prediction 39 58 - -
Lele06g1172 367 MobiDBLite consensus disorder prediction 338 367 - -
Lele06g1172 367 MobiDBLite consensus disorder prediction 274 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1172 Lele-ChrLele06 7290891 7294484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1172 88 227 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 59.459 3.35e-39 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele06g1172 HLH 9e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1172 06 7290891 7294484 Lele06g1172 06 7290891 7294484 ECH
Lele06g1172 06 7290891 7294484 Lele07g1360 07 8206315 8211412 hybridization
Lele06g1172 06 7290891 7294484 Lele08g1164 08 7287219 7291180 hybridization