Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1161 ATGGGAGCCGATGAGGATCTCCATTATTCTGGCGACCATTTCAGGGTCTATAGCTCAGTGGTAGAGCATTTGACTGCAGATCAAGAGGTCACCGGTTCAAACCCGCATTCTCTTCTACCCGATTGGTGGATCCTCTCACAATTCCGAAGTGCGACGAAAACAGAAGCCGAAGGAAGGGAGAGAGGATCGTTCCAATTTATTCTGATCAGATCTTCCTATTTATCTCGTTTCCTTTCGGCGTTCAAGCATCGAATTCAGATCCATCGTATTGAATATTCATGGCGGCAGCGAGGCGGGGAAGAGAGGATCGTTCCACTTTATTCTGATCAGATCTTCCTATTTATCTCGTATCCTTTCGGTGTTCAAGTATCGAATTCAGATCCATCGGATTGGATATTCATGGCGGCAGCTAAGCGGCTCCGGGACCTGCAAGCCCAATTGGGGAACAGGATCTGCGTTGATTGCTCTCAAAAGAACCCCCAATGGGCTTCCGTTTCCTATGGAGTTTTCATGTGCTTGGAATGTTCCGGCAAGCACCGTGGCCTCGGTGTACACATCTCTTTCGTCCGATCCGTTACGATGGATTCCTGGTCCGAAATTCAGATCAAGAAGATGGAAGCAGGTGGTAATGAGAAACTCAACTCCTTCCTCGCGCAGTATGGTATCGCCAAGGAGACCGATATTGTCGCCAAATACAATACTAATTCCGCTAGCATTTATAGGGATCGAATTCAGGCCCTTGCCGAGGGACGACCGTGGCGGGATCCACCGGTGGTCAGGGAGAACCTTGGCCCTGGGAAGACTAAGCCTCCCTTGCCGAAAAGCGGAAATGGTGGAGGCTGGGATAGTTGGGATAACGATGACGGGGTCAGATCACCTCATGACATCAAGCGCAACATGTCTACAGGGGATGTAAGGGGGTTCAACGGAGGTTCGACCGGTAGCATGCCCGCGAGATCGAGGTCGACAGAGGATATCTACACGCGGTCGCAATTGGAGGCTTCCGCTGCCAACAAAGACAACTTTTTCGCTCGCAAGCTGGCAGAGAACGAATCACGACCCCAAGGTATTCCACCCTCGCAAGGAGGCAAGTACGTCGGATTCGGATCTAGTCCCGCACCTTCCCGGGTGAATAACCAACAAGGCGACGTCTTTTCAGTTATGTCTCAGGGATTTGGTAAATTGTCTTTGGCTGCTTCCTCTGCGGCCCAGTCTGCTGCTAATGTTGTTCAGGCTGGCACTAAAGAGATAGCTACCAAGGTAAAGGATGGTGGCTATGATTACAGAGTCAATGAAACTGTCAATGTTGTCTCTCAGAAGACATCAGAGATAGGACAAAGGACGTGGGGGATTATGAAGGGGGTCATGGCTTTGGCTTCGCAGAAGGTTGAGGAGTACACCAGAGATAACCCCAACTGGCCGAATGATAACTGGCAGAGAAATGAAAATGGTAGGAACGGCTATTATGAAGAATATAATCAAGGGAATAAAGAAAGAACCAACTAA 1506 0.4954 MGADEDLHYSGDHFRVYSSVVEHLTADQEVTGSNPHSLLPDWWILSQFRSATKTEAEGRERGSFQFILIRSSYLSRFLSAFKHRIQIHRIEYSWRQRGGEERIVPLYSDQIFLFISYPFGVQVSNSDPSDWIFMAAAKRLRDLQAQLGNRICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNEKLNSFLAQYGIAKETDIVAKYNTNSASIYRDRIQALAEGRPWRDPPVVRENLGPGKTKPPLPKSGNGGGWDSWDNDDGVRSPHDIKRNMSTGDVRGFNGGSTGSMPARSRSTEDIYTRSQLEASAANKDNFFARKLAENESRPQGIPPSQGGKYVGFGSSPAPSRVNNQQGDVFSVMSQGFGKLSLAASSAAQSAANVVQAGTKEIATKVKDGGYDYRVNETVNVVSQKTSEIGQRTWGIMKGVMALASQKVEEYTRDNPNWPNDNWQRNENGRNGYYEEYNQGNKERTN 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1161 501 ProSiteProfiles ARF GTPase-activating proteins domain profile. 134 217 IPR001164 GO:0005096
Lele06g1161 501 SMART arf_gap_3 137 262 IPR001164 GO:0005096
Lele06g1161 501 MobiDBLite consensus disorder prediction 251 323 - -
Lele06g1161 501 MobiDBLite consensus disorder prediction 305 323 - -
Lele06g1161 501 CDD ArfGap_ArfGap1 136 250 - -
Lele06g1161 501 Pfam Putative GTPase activating protein for Arf 138 232 IPR001164 GO:0005096
Lele06g1161 501 MobiDBLite consensus disorder prediction 287 301 - -
Lele06g1161 501 Gene3D Arf GTPase activating protein 133 256 IPR038508 -
Lele06g1161 501 FunFam ADP-ribosylation factor GTPase-activating protein 132 262 - -
Lele06g1161 501 PRINTS HIV Rev interacting protein signature 168 185 IPR001164 GO:0005096
Lele06g1161 501 PRINTS HIV Rev interacting protein signature 149 168 IPR001164 GO:0005096
Lele06g1161 501 PRINTS HIV Rev interacting protein signature 189 210 IPR001164 GO:0005096
Lele06g1161 501 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 134 498 IPR044519 GO:0005096|GO:0016192
Lele06g1161 501 MobiDBLite consensus disorder prediction 467 501 - -
Lele06g1161 501 SUPERFAMILY ArfGap/RecO-like zinc finger 138 240 IPR037278 -
Lele06g1161 501 MobiDBLite consensus disorder prediction 467 495 - -
Lele06g1161 501 AntiFam tRNA translation 16 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1161 Lele-ChrLele06 7210157 7216213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1161 138 220 C2H2 Transcription Factor Family AT4G21160 50.000 5.07e-22 95.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1161 06 7210157 7216213 Lele13g1856 13 26464271 26467587 CCT
Lele06g1161 06 7210157 7216213 Lele14g1797 14 24832430 24835769 CCT
Lele06g1161 06 7210157 7216213 Lele15g0555 15 3274311 3275877 CCT
Lele06g1161 06 7210157 7216213 Lele16g0569 16 3206358 3207942 CCT
Lele06g1161 06 7210157 7216213 Lele06g1161 06 7210157 7216213 ECH
Lele06g1161 06 7210157 7216213 Lele07g1345 07 8131965 8134821 hybridization
Lele06g1161 06 7210157 7216213 Lele08g1153 08 7212649 7216152 hybridization