Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1155 ATGATCAGAGATCCGATACAGATACACACATACAGAGATCAGATACATATCTGTACCGATGTGTGTTTTTGCTGCTATGTACTTCAGAGAACTGATCTGGGTAAAATGTGCAATTATATGCGGAAATTTTTCTCCCACAACCCAACTGATAATTACACTGAATTAGACATTAGTGGCCCAGAATGTGATGTGCTGTTATTGGAAAAATGTCTTTCAAGACTGACGACAGATGAAAAACTGAAGCAAGCATTTGCTTCTTTTGGGCAGCTGGTTGAAGCTAAAGTCATAACAGATAGAATCTCTGGAAGATCAAAGGGATTTGGTTTTGTAACTTACGCAACTATAGAAGATGCTGAAAGGGCCAAAGAAGAAATGAATGCTAAGTTTTTGGATGGATGGGTTATTTTTGTTGATCCTGCCAAACCAAGAGAACCTAAACCTATGCAATCACAGCCTAAGCCCTCCGAAACAGGTTTTACAGTTAACAAGACTGTTGGATGGTGTGGTTGA 510 0.3922 MIRDPIQIHTYRDQIHICTDVCFCCYVLQRTDLGKMCNYMRKFFSHNPTDNYTELDISGPECDVLLLEKCLSRLTTDEKLKQAFASFGQLVEAKVITDRISGRSKGFGFVTYATIEDAERAKEEMNAKFLDGWVIFVDPAKPREPKPMQSQPKPSETGFTVNKTVGWCG 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1155 169 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 132 IPR000504 GO:0003723
Lele06g1155 169 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 142 IPR000504 GO:0003723
Lele06g1155 169 SMART rrm1_1 64 138 IPR000504 GO:0003723
Lele06g1155 169 Gene3D - 67 153 IPR012677 -
Lele06g1155 169 PANTHER NUCLEOLAR PROTEIN 8 71 168 - -
Lele06g1155 169 SUPERFAMILY RNA-binding domain, RBD 71 153 IPR035979 GO:0003676
Lele06g1155 169 MobiDBLite consensus disorder prediction 141 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1155 Lele-ChrLele06 7186658 7188617 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1155 66 156 Eukaryotic Initiation Factors Gene Family AT2G23350 38.462 4.92e-12 61.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1155 06 7186658 7188617 Lele13g1852 13 26448174 26450750 CCT
Lele06g1155 06 7186658 7188617 Lele14g1794 14 24815348 24817727 CCT
Lele06g1155 06 7186658 7188617 Lele15g0558 15 3289431 3292013 CCT
Lele06g1155 06 7186658 7188617 Lele16g0571 16 3220374 3222755 CCT
Lele06g1155 06 7186658 7188617 Lele06g1155 06 7186658 7188617 ECH
Lele06g1155 06 7186658 7188617 Lele07g1341 07 8106217 8108616 hybridization
Lele06g1155 06 7186658 7188617 Lele08g1147 08 7183272 7188144 hybridization