Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1143 ATGGTGGAATGTCAGGCCGATGAACGACTAGTGTGTATTAGCATAAGACAGGCACAAATGAAAGGGGTGGGTGGGTTTGAATGGTTCCTGAGATTGGGCGCTATACCTACCATGCGTGCATCTATATTTGGAGGCATGAAGAGGGAGAGAGAATCCGAGAGCCTGGACCTGGCCAATTGTTTGATGCTGCTGTCTCACCATGCTCAACAACACATCAAGGTGGACACTTCAGAATTCGAGTGCAAGACGTGCAAGCGAAAGTTCTCGTCGTTTCAGGCGCTGGGAGGGCACAGGGCGAGCCACAAGAGGCCGAAGCTCTACGGAGAAGACGACCTGAAAGCAGAGGCCAGATCTCTCAAGTTAGGGAACAAGCCCAGGACGCACGAGTGCTCCATCTGTGGGCTTGAATTCTCGTTGGGGCAAGCACTTGGGGGCCACATGAGGAAGCACAGAGCCGCTCTTCGCCATGACACCAACCCGGCGAACGACCATGTGGTTGCCAAGGTCCCTGTTCTTAAGAGATCCAATAGTACGAGGGTGTTTTGTTTGGACCTCAACTTAACGCCTCTCCAGAATGATTTGAACTTGTTGTTTGGGAAGATGCCACCGGCTCTCACTTGA 621 0.5233 MVECQADERLVCISIRQAQMKGVGGFEWFLRLGAIPTMRASIFGGMKRERESESLDLANCLMLLSHHAQQHIKVDTSEFECKTCKRKFSSFQALGGHRASHKRPKLYGEDDLKAEARSLKLGNKPRTHECSICGLEFSLGQALGGHMRKHRAALRHDTNPANDHVVAKVPVLKRSNSTRVFCLDLNLTPLQNDLNLLFGKMPPALT 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1143 206 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 106 IPR013087 -
Lele06g1143 206 PANTHER ZINC FINGER PROTEIN ZAT5 47 192 - -
Lele06g1143 206 Pfam C2H2-type zinc finger 79 104 - -
Lele06g1143 206 Pfam C2H2-type zinc finger 128 152 - -
Lele06g1143 206 ProSitePatterns Zinc finger C2H2 type domain signature. 130 150 IPR013087 -
Lele06g1143 206 SMART c2h2final6 79 101 IPR013087 -
Lele06g1143 206 SMART c2h2final6 128 150 IPR013087 -
Lele06g1143 206 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Lele06g1143 206 ProSiteProfiles Zinc finger C2H2 type domain profile. 128 150 IPR013087 -
Lele06g1143 206 Gene3D Classic Zinc Finger 77 150 - -
Lele06g1143 206 SUPERFAMILY beta-beta-alpha zinc fingers 79 150 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1143 Lele-ChrLele06 7110530 7111736 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1143 46 200 C2H2 Transcription Factor Family AT2G37430 48.824 5.83e-43 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele06g1143 zf-C2H2_6 8.8e-10 CL0361