Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1142 ATGAAAAGACAACACACACAGAGCTTAGATCTCGCAATCTCTCTGATGCTTCTCTCTCAACAACCACCACCACAGCACAAGTCCTTGCCCCAAGAATTTGAGTGCAAGACCTGCAACCGCAAGTTCTCGTCGTTTCAGGCGCTCGGAGGTCACAGAGCCAGCCATAAGAAGCCCAAACTTGATTCCCAAGCAGAGCTCCAAAACCCCAATCCGCAGAAATCGTTGCACGAGTGCTCCATTTGTGGCCAGCGATTCTCTCTGGGACAAGCTCTGGGCGGCCACGTGAGAAAGCACAGAGCCGCCATGAACGACGGCTCTCCTTCAATAACTGGGGTGGTTCCCGAAGTCCCAGTTCTCAAACGATCTAGCAGCAGCAAGAGGGTTATGTGCCTGGACTTGAACTTGACCCCTCTCGAGAACGACTTGAAGTTGCTTTTTGGAAACAAGGCTCCTTCCGTTAATCTTTCCTTGTTGTGCTGA 480 0.5146 MKRQHTQSLDLAISLMLLSQQPPPQHKSLPQEFECKTCNRKFSSFQALGGHRASHKKPKLDSQAELQNPNPQKSLHECSICGQRFSLGQALGGHVRKHRAAMNDGSPSITGVVPEVPVLKRSSSSKRVMCLDLNLTPLENDLKLLFGNKAPSVNLSLLC 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1142 159 Pfam C2H2-type zinc finger 76 100 - -
Lele06g1142 159 Pfam C2H2-type zinc finger 33 58 - -
Lele06g1142 159 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Lele06g1142 159 SUPERFAMILY beta-beta-alpha zinc fingers 33 98 IPR036236 -
Lele06g1142 159 ProSitePatterns Zinc finger C2H2 type domain signature. 35 55 IPR013087 -
Lele06g1142 159 ProSiteProfiles Zinc finger C2H2 type domain profile. 33 60 IPR013087 -
Lele06g1142 159 SMART c2h2final6 76 98 IPR013087 -
Lele06g1142 159 SMART c2h2final6 33 55 IPR013087 -
Lele06g1142 159 Gene3D Classic Zinc Finger 30 98 - -
Lele06g1142 159 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 103 IPR013087 -
Lele06g1142 159 MobiDBLite consensus disorder prediction 48 71 - -
Lele06g1142 159 PANTHER ZINC FINGER PROTEIN ZAT5 12 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1142 Lele-ChrLele06 7105742 7106221 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1142 1 158 C2H2 Transcription Factor Family AT2G37430 46.893 4.33e-50 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele06g1142 zf-C2H2_6 4.5e-08 CL0361