Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele06g1141 | ATGAAAGCGGATCAAGAAGAAGTGTATGAAGCAAAGGACGAGCCTCTGTCACAGTTCGTAACAATCTACCTTTCCGAGGCAAAGCCTCAATTTCCGCTAGCTATATCAGACATGAACACGTACGATTTGACATTGAAAACAACACTTAATCGATATGGGAAGTTGTTGGCAATAGAGGACGGCTGGCCAGAGGGAGTATCCACCACTGTTGAGTCCGATATGGCCATAGCTGCCACCATTTCTCTTCCTCTCACATCCTCCCGTTATCGGTCTTTTCCGTGCAGCGGCCGCCTTCGTCCTTCAACATCCTTATATGCTTCCCCTTCCAGTTTGCCCGTACCTCGATATTCCGTTAAGTGCCCTAGTTCTCGCATCGTAGCTTCTTCAAGGAGCATTGGAGCCCCCGTGAAAAGTTCGTCCGTTTCATTCTTGGACAGAAAAGAAACCGGGTTTCTCCATTTCGCCAAGTATCACGGACTCGGCAATGACTTCATTTTGATTGACAACAGAGACTCTTTAGAGCCCAAGATCAGCTCAGATAGAGCTGTTGAACTATGTGATCGTAACTTCGGGATTGGTGCTGATGGAGTTATCTTTGTCATGACTGGCACCAATGGCGCTGACTATACCATGAGAATCTTCAATTCTGATGGTAGTGAACCCGAGATGTGTGGAAATGGAATGCGATGCTATGCCAAATTCATTGGTCAACTTGAGAACTTACAGGGTAGGCAAAGTTTTACTGTACACACTGGTGCTGGCCTGATTATTCTAGAAATCGTTGAGGATGGAAATGTCAGAGTTGACATGGGGGAGCCAATTCTTAAAGCGTCAGATAATATATTGGTCGACGATTTGAATCTAGCAGAAATTGGTCCTAAGTTTGAACATCACAAGGTGTTTCCTGCACGAACAAACACAGAATTTGTCCAAGTTCTGTCTGATCATCACCTAAAGATGCGTGTTTGGGAGCGTGGAGCAGGAGCAACTCTAGCCTGTGGAACTGGAGCTTGTGCTTTAGTTGTTGCAGCAGTTCTCGAGGGTTGTGCCAAGAGGGGTGGAGATTTACCAGTCGAGGCTGGTGTTATTCCTAGAGCAGTTCGCCAAATTTTTTATATGTTGGAGGCACAGAATGCTGACTATACCATGAAAGTGACATTTCTTGAACTCTACAATGAAGAAATTACCGATTTATTGGCCCCGGAAGACAATTCTAGGTCTGTGGAAGAAAAGCAAAAGAAACCTCCCACTCTTATGGAAGATGGGAAGGGTTGTGTGGTTGTGAGAGGTCTAGAAGAAGAATCTGTGTATGGAGTAAATGAAATTTATGCCCTGTTGGAACGTGGGGCATCAAAAAGACGCACAGCAGATACATTGCTTAACAAGCGAAGCAGCCGCTCACATTCAGTCTTAACAATTACCATCTATGTGAAAGAAGCAGTCATTGGTGGTGAGGAATTGATTAAATGTGGCAAGCTTAATCTTGTTGATTTGGCAGGCTCAGAAAATATATTGCGTTCAGGAGCACGTGAGGGTCGTGCAAGAGAAGCAGGGGAGATAAACAAAAGCTTGCTTACCCTTGGACGTGTCATAAATGCACTTGTGCAGCATTCTGCTCATGTGCCTTATAGGGATAGTAAGCTTACAAGGATTTTAAGAGACTCCTTAGGAGGGAAAACAAAAACATGCATAATAGCTACTATTTCACCATCTGCTTATTGTTTGGAAGAAACATTAAGTACACTGGATTACGCTAGTCGTGCCAAGAACATAAAGAACAAGCCTGAGGCGAACCAAAAGTTTTCGAAGGCTGTTTTGCTGAAGGACTTGTATATGGAAATTGAGAAGATGAAAGAAGGCAAGAAATGA | 1869 | 0.4409 | MKADQEEVYEAKDEPLSQFVTIYLSEAKPQFPLAISDMNTYDLTLKTTLNRYGKLLAIEDGWPEGVSTTVESDMAIAATISLPLTSSRYRSFPCSGRLRPSTSLYASPSSLPVPRYSVKCPSSRIVASSRSIGAPVKSSSVSFLDRKETGFLHFAKYHGLGNDFILIDNRDSLEPKISSDRAVELCDRNFGIGADGVIFVMTGTNGADYTMRIFNSDGSEPEMCGNGMRCYAKFIGQLENLQGRQSFTVHTGAGLIILEIVEDGNVRVDMGEPILKASDNILVDDLNLAEIGPKFEHHKVFPARTNTEFVQVLSDHHLKMRVWERGAGATLACGTGACALVVAAVLEGCAKRGGDLPVEAGVIPRAVRQIFYMLEAQNADYTMKVTFLELYNEEITDLLAPEDNSRSVEEKQKKPPTLMEDGKGCVVVRGLEEESVYGVNEIYALLERGASKRRTADTLLNKRSSRSHSVLTITIYVKEAVIGGEELIKCGKLNLVDLAGSENILRSGAREGRAREAGEINKSLLTLGRVINALVQHSAHVPYRDSKLTRILRDSLGGKTKTCIIATISPSAYCLEETLSTLDYASRAKNIKNKPEANQKFSKAVLLKDLYMEIEKMKEGKK | 622 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele06g1141 | 622 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 359 | 619 | IPR027417 | - | |
| Lele06g1141 | 622 | Hamap | Diaminopimelate epimerase [dapF]. | 152 | 397 | IPR001653 | GO:0008837|GO:0009089 | |
| Lele06g1141 | 622 | PRINTS | Kinesin heavy chain signature | 492 | 510 | IPR001752 | GO:0003777|GO:0005524|GO:0007018|GO:0008017 | |
| Lele06g1141 | 622 | PRINTS | Kinesin heavy chain signature | 458 | 475 | IPR001752 | GO:0003777|GO:0005524|GO:0007018|GO:0008017 | |
| Lele06g1141 | 622 | PRINTS | Kinesin heavy chain signature | 541 | 562 | IPR001752 | GO:0003777|GO:0005524|GO:0007018|GO:0008017 | |
| Lele06g1141 | 622 | ProSitePatterns | Kinesin motor domain signature. | 491 | 502 | IPR019821 | GO:0003777|GO:0005524|GO:0007018 | |
| Lele06g1141 | 622 | TIGRFAM | DapF: diaminopimelate epimerase | 153 | 279 | IPR001653 | GO:0008837|GO:0009089 | |
| Lele06g1141 | 622 | FunFam | Diaminopimelate epimerase, chloroplastic | 126 | 275 | - | - | |
| Lele06g1141 | 622 | SUPERFAMILY | Diaminopimelate epimerase-like | 152 | 277 | - | - | |
| Lele06g1141 | 622 | FunFam | Kinesin-like protein KIN-5D | 276 | 622 | - | - | |
| Lele06g1141 | 622 | ProSiteProfiles | Kinesin motor domain profile. | 354 | 591 | IPR001752 | GO:0003777|GO:0005524|GO:0007018|GO:0008017 | |
| Lele06g1141 | 622 | Pfam | Kinesin motor domain | 358 | 591 | IPR001752 | GO:0003777|GO:0005524|GO:0007018|GO:0008017 | |
| Lele06g1141 | 622 | Gene3D | Diaminopimelate Epimerase; Chain A, domain 1 | 126 | 279 | - | - | |
| Lele06g1141 | 622 | SMART | kinesin_4 | 225 | 599 | IPR001752 | GO:0003777|GO:0005524|GO:0007018|GO:0008017 | |
| Lele06g1141 | 622 | PANTHER | KINESIN-LIKE PROTEIN KIF11 | 348 | 619 | - | - | |
| Lele06g1141 | 622 | Pfam | Diaminopimelate epimerase | 283 | 358 | IPR001653 | GO:0008837|GO:0009089 | |
| Lele06g1141 | 622 | Pfam | Diaminopimelate epimerase | 154 | 274 | IPR001653 | GO:0008837|GO:0009089 | |
| Lele06g1141 | 622 | ProSitePatterns | Diaminopimelate epimerase signature. | 215 | 229 | IPR018510 | GO:0005737|GO:0008837|GO:0009089 | |
| Lele06g1141 | 622 | SUPERFAMILY | Diaminopimelate epimerase-like | 283 | 362 | - | - | |
| Lele06g1141 | 622 | Gene3D | Kinesin motor domain | 280 | 622 | IPR036961 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele06g1141 | Lele-ChrLele06 | 7092034 | 7101836 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele06g1141 | 361 | 622 | Calmodulin-binding Proteins | AT5G65930 | 37.121 | 1.95e-40 | 156 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lele06g1141 | 06 | 7092034 | 7101836 | Lele07g1326 | 07 | 8011419 | 8014133 | hybridization | |
| Lele06g1141 | 06 | 7092034 | 7101836 | Lele08g1133 | 08 | 7097294 | 7099873 | hybridization |