Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1122 ATGGAACCACCACCAGTCTCTTTCTTGTCAAGTCATCAACTTGTTGAACTTCAGGGACTTCAAGACAAGATCAAATTAGTTGCTATCGATCATCAAGACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAATAAGGTTCCATCGTTGGAACATAACGGCAAGGTGGACATTGCCTATGTTCCATTTGTCGAAAGATTCCAAGTCGTCTTTTTTGAGGAAGTGAACAAGATTGGTGCATATACCCAGACAAGAACTGATCCTAAGGAAATCGTTGGCATTTTCAAGAAACGTGTTTTGATGGTCACAACCGGCAGCGTCCGACGATCCCCGCAAGGCCTCGACTTCAGAGCTTTTGGCTGTGTCATTCAGCAGTGCACGGACCATAGTCTTGTCCGCCAAGCCAAGCAACTGCATGCTCGCCTTATCCTGTTCTCAGTCACACCAGACAACTTCCTTGCATCAAAGCTCATCACTTTCTACGCCAAATCCAACCACATCTCCGAAGCGCGTAGGAATGCCCCAAAGAGATATTGTGTCGTGGAATGCTATGATTGCTGGATATGCAAGCAACTGTACTTAGAGATGCTAGGTTCGACGGGGTTTAATCCTGATGCATTGACAGTTGTCAGTGTGCTGCAGGCCTGTGCTCAGTCAAAGGATATTATATTTGGAATGGAAGTCCACCGTTTAATCATTGGGAATCAAATCAAGATTGATCTTTCACTTTGTAATGCTTTGATTGGAATGTATGCAAAATGTGGCAGCTTGGATTACGCCCAGGAATTGTTTGAAGAAATGGGTGAAAAGGATGAAGTTATGTTTCAATCATTTCAGGTTCATCCTGACCCTGTGACATTAGCATCAGTGCTGGCTGCTTGTGCTCATTCTGGACAAGTGGATGAAGCTTGGGAAATCTTCAACACAATATCCTTTAAATATGGAATTCAGCCCTCGGCAGAGCACTATGCTTGCATGGTGGGTGTTCTTAGTCGAGCTGGTAAGCTCTTGGAAGCAGCAGACTTCATTTCTAAGATGCCAGTAGAACCAAGTGCGAGAGTTTGGGGTGCTTCGCTGCATGGGTCTTCAGTTTACTGTGATGTGGAAATGGACAAGTTTGCTTGTGATCATTTGTTCAAGATTGAGCCTGAGAATACTGGGAATTACGTAATTATGGCAAATTTATTTTCACAAGCTGGAAGATGGGAAGAAGCTAATAAAGTTAGGAGGAAAATGGAAGAGATAGGATTAAAGAAGATTCGTGGTAGTAGCTGGATTGAAACAAGTGGAGCGTTAGTAAGCTTCATCGCTAAGGATGTTTCAAATGTAAGATCTGATGAGATTTATGTATTGTTGGAAGGATTGCTTGGATTAATGAGAGAAGAAGGATATATTATGCCAGTAGTGTTAGATGATGAAAGTGCGTTTATCTGA 1437 0.4294 MEPPPVSFLSSHQLVELQGLQDKIKLVAIDHQDRPAWYKEKVYPENKVPSLEHNGKVDIAYVPFVERFQVVFFEEVNKIGAYTQTRTDPKEIVGIFKKRVLMVTTGSVRRSPQGLDFRAFGCVIQQCTDHSLVRQAKQLHARLILFSVTPDNFLASKLITFYAKSNHISEARRNAPKRYCVVECYDCWICKQLYLEMLGSTGFNPDALTVVSVLQACAQSKDIIFGMEVHRLIIGNQIKIDLSLCNALIGMYAKCGSLDYAQELFEEMGEKDEVMFQSFQVHPDPVTLASVLAACAHSGQVDEAWEIFNTISFKYGIQPSAEHYACMVGVLSRAGKLLEAADFISKMPVEPSARVWGASLHGSSVYCDVEMDKFACDHLFKIEPENTGNYVIMANLFSQAGRWEEANKVRRKMEEIGLKKIRGSSWIETSGALVSFIAKDVSNVRSDEIYVLLEGLLGLMREEGYIMPVVLDDESAFI 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1122 478 Gene3D Glutaredoxin 12 56 - -
Lele06g1122 478 TIGRFAM PPR: pentatricopeptide repeat domain 286 320 IPR002885 -
Lele06g1122 478 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 192 277 - -
Lele06g1122 478 FunFam pentatricopeptide repeat-containing protein At2g33680 275 448 - -
Lele06g1122 478 Pfam E motif 366 428 IPR046848 -
Lele06g1122 478 Gene3D - 57 102 - -
Lele06g1122 478 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Lele06g1122 478 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 241 275 IPR002885 -
Lele06g1122 478 Pfam PPR repeat 245 271 IPR002885 -
Lele06g1122 478 Pfam PPR repeat 324 348 IPR002885 -
Lele06g1122 478 Pfam PPR repeat 287 309 IPR002885 -
Lele06g1122 478 Gene3D Tetratricopeptide repeat domain 180 276 IPR011990 GO:0005515
Lele06g1122 478 Gene3D Tetratricopeptide repeat domain 277 439 IPR011990 GO:0005515
Lele06g1122 478 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 319 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1122 Lele-ChrLele06 6989084 6993711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1122 79 466 Glycoside Hydrolase AT3G49170 27.962 5.70e-52 186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1122 06 6989084 6993711 Lele13g1814 13 26236224 26238679 CCT
Lele06g1122 06 6989084 6993711 Lele14g1757 14 24626143 24628679 CCT
Lele06g1122 06 6989084 6993711 Lele15g0592 15 3492210 3494639 CCT
Lele06g1122 06 6989084 6993711 Lele16g0606 16 3412929 3415467 CCT
Lele05g1258 05 7867592 7869194 Lele06g1122 06 6989084 6993711 ECH
Lele06g1122 06 6989084 6993711 Lele06g1122 06 6989084 6993711 ECH
Lele06g1122 06 6989084 6993711 Lele07g1304 07 7909996 7911856 hybridization
Lele06g1122 06 6989084 6993711 Lele08g1109 08 6981271 6989146 hybridization