Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1112 ATGCCGCCTAAGCAGCAATCGAAAGCTGATATAGCAAAGAAGCAGAAGATCGTAGAGGATAAAACCTTTGGTCTAAAAAACAAGAATAAGAGCAAAAATGTCCAGAAATACGTTCAGAACCTCAAGCAGTCTGTGCAGCCGAACCCTGATCCTTCCAAAACCGCTGCTAAGAAAAAGAAGGAGGAGGACAAGGCCAAGGAGAAGGAGCTAAATGAGTTGTTCAAAATCGCTGTTACCCAGCCTAAAGTGCCAGTTGGTGTTGATCCCAAGTCCATAGTATGTGAGTTTTTTAAAGCAGGACAGTGTACCAAGGGCTTTAAATGCAAGTTCTCACATGATTTGAATGTTCAGAGGAAAGGGGAAAAGATTGACATTTACAGTGATAAGCGCGACCAGGAGACGATGGAGGATTGGGATCAAGAGACCTTGGAGAAGGTAGTGGAGTCAAAGAAAACAGAGTATCAACAGAATAAACCAACTGAGATTGTCTGTAAACATTTTCTGGAGGCGGTGGAGAAGAAGCAATATGGTTGGTTTTGGGTCTGCCCGAATGGTGGTAAGAATTGCCACTATAGACATGCCCTTCCCCCTGGATATGTTTTAAAATCTCAAATGAAGGCCCTGTTGGAGGAAGAAGCTGACAAGATGCCAATTGAGGAGGAGATTGAGGATCAGCGCTCCAAATTGAAAACTACTACTACTATGACTCCTGAGTTATTCATGCAATGGAAGAAGAAGAAGATTGAAGAAAGAGATGCCAATTTGGCGGAACAACAGGCAGAGAGAGCTAAGAATGATCGCATGAGTGGTCGCGAGCTATTTTTGTCTAATGCTAGCTTGTTTGTGGATGATGCTGAGGCATATGACCAGTATCAAAGAGAGCCAGAATCTAACGATAACGAGCAGAAGCCACAGGCAAATGGCAATGTTCAGGATGATCCTAACGCCTCAACAGCTACTGATGCTGATGCTGAAGGAGAAGCTAATGATGAAGCGAGTGATGTAGATGATGATGATGAGCTAGACATGGATGAATTGAATGAATTGGAAGCAAGTTTATCGAAGACATCAATCCAAATAAAGGAGCCAGGAGCGGAAGCTTAA 1104 0.433 MPPKQQSKADIAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQSVQPNPDPSKTAAKKKKEEDKAKEKELNELFKIAVTQPKVPVGVDPKSIVCEFFKAGQCTKGFKCKFSHDLNVQRKGEKIDIYSDKRDQETMEDWDQETLEKVVESKKTEYQQNKPTEIVCKHFLEAVEKKQYGWFWVCPNGGKNCHYRHALPPGYVLKSQMKALLEEEADKMPIEEEIEDQRSKLKTTTTMTPELFMQWKKKKIEERDANLAEQQAERAKNDRMSGRELFLSNASLFVDDAEAYDQYQREPESNDNEQKPQANGNVQDDPNASTATDADAEGEANDEASDVDDDDELDMDELNELEASLSKTSIQIKEPGAEA 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1112 367 SUPERFAMILY CCCH zinc finger 89 113 IPR036855 GO:0046872
Lele06g1112 367 MobiDBLite consensus disorder prediction 40 64 - -
Lele06g1112 367 Pfam DRG Family Regulatory Proteins, Tma46 216 294 IPR032378 -
Lele06g1112 367 Gene3D - 204 279 - -
Lele06g1112 367 PANTHER ZINC FINGER-CONTAINING PROTEIN P48ZNF 1 365 - -
Lele06g1112 367 Gene3D - 87 203 - -
Lele06g1112 367 Coils Coil 246 266 - -
Lele06g1112 367 MobiDBLite consensus disorder prediction 290 367 - -
Lele06g1112 367 SMART c3hfinal6 158 195 IPR000571 GO:0046872
Lele06g1112 367 SMART c3hfinal6 88 114 IPR000571 GO:0046872
Lele06g1112 367 MobiDBLite consensus disorder prediction 301 318 - -
Lele06g1112 367 ProSiteProfiles Zinc finger C3H1-type profile. 88 115 IPR000571 GO:0046872
Lele06g1112 367 ProSiteProfiles Zinc finger C3H1-type profile. 158 196 IPR000571 GO:0046872
Lele06g1112 367 MobiDBLite consensus disorder prediction 324 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1112 Lele-ChrLele06 6922602 6926011 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele06g1112 DFRP_C 1.5e-16 No_clan