Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1102 ATGGGAGCTGCCCGCAAGTTGAGGTCTCACCGCAGGAGGCAAAGGTGGGCAGATAAGGCATACAAAAAGTCTCACCTTGGCAATGAATGGAAGAAACCTTTTGCTGGATCTTCCCACGCAAAGGGTATTGTTCTTGAGAAGATAGGTATTGAGGCTAAGCAGCCAAACTCTGCCATTCGAAAGTGTGCCAGGGTTCAACTTATCAAGAACGGAAAGAAGATTGCTGCCTTTGTACCTAACGATGGTTGCTTAAACTACATAGAGGAGAATGACGAAGTCTTGATAGCTGGATTTGGACGAAAGGGTCACGCTGTGGGTGATATTCCTGGTGTCAGATTCAAGGTTGTCAAGGTATCTGGTGTCTCACTCCTTGCCCTCTTCAAGGAGAAGAAGGAGAAGCCAAGGTCTTAA 411 0.4696 MGAARKLRSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1102 136 Gene3D - 19 136 IPR012340 -
Lele06g1102 136 MobiDBLite consensus disorder prediction 1 19 - -
Lele06g1102 136 PIRSF RPS12p_RPS12a_RPS23e_RPS12o 10 136 IPR006032 GO:0003735|GO:0005840|GO:0006412
Lele06g1102 136 ProSitePatterns Ribosomal protein S12 signature. 53 60 IPR006032 GO:0003735|GO:0005840|GO:0006412
Lele06g1102 136 TIGRFAM uS12_E_A: ribosomal protein uS12 3 135 IPR005680 GO:0003735|GO:0006412|GO:0015935
Lele06g1102 136 CDD Ribosomal_S23 20 133 IPR005680 GO:0003735|GO:0006412|GO:0015935
Lele06g1102 136 SUPERFAMILY Nucleic acid-binding proteins 14 134 IPR012340 -
Lele06g1102 136 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 1 136 IPR006032 GO:0003735|GO:0005840|GO:0006412
Lele06g1102 136 FunFam 40S ribosomal protein S23 19 136 - -
Lele06g1102 136 MobiDBLite consensus disorder prediction 1 20 - -
Lele06g1102 136 Pfam Ribosomal protein S12/S23 25 135 IPR006032 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1102 Lele-ChrLele06 6855961 6856580 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1102 1 136 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 94.853 4.12e-91 258