Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1088 ATGAACACCGTTTCTCGTTGGATTTCAGAACTACGTGTTTCTCTCACTGTTAAATACTATTTCCACTACAGGCCCGTAACCCACCAGCTGCAACTGGCATCGGCGACGGAATCCCTAATGCCCAAATTTGTTTTGAAGGAATTAGCAGTCTTGGGTCTTTCGAGAGCCTTACTGGAAAGACGATCACCTTGGAGGTGGAAAAGCTCCGACACGATCGATAATGTCAAGGCTAAGATACAGGATAAGGAAGGGATTCCCCCTGACCAGCAGAAGCTCGTCTTTGCCGGCGAGCAACTCGAGGACGGTCGGACCCTCGCCGATTACAATATCCAGAAGGAGTCCACGCTTCACCTGGTTCTCCCCCTGAGGGGTGGCATGCAAATCTTCTTCAAAACCCTCACCGGCAAGACCATCATCCTCGAGGTAGAAAGCTCTGACACCATCGATAACGTCAAAGCCAAGATACAGGACAAGGAAGGAATGCAGATTTTTGTGAAGACTCTGACTGGCAAGACTATCACTCTGGAGGTGGAGAGCTCGGACACCATATATAATGTCAAGGCAAAGATTCAGGACAAGGAGGGAATTCCACCTGACCAACAACGTCTGATCTTCGCCGGGAAACAACTTGAAGATGGGCGCACTCTCTCTGATTATAAAAGTCAGAAGGAGTCTACCCTTCACCTTGTACTCAGGCTGCGTGGTGGGGATGTGAAATGA 720 0.4931 MNTVSRWISELRVSLTVKYYFHYRPVTHQLQLASATESLMPKFVLKELAVLGLSRALLERRSPWRWKSSDTIDNVKAKIQDKEGIPPDQQKLVFAGEQLEDGRTLADYNIQKESTLHLVLPLRGGMQIFFKTLTGKTIILEVESSDTIDNVKAKIQDKEGMQIFVKTLTGKTITLEVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYKSQKESTLHLVLRLRGGDVK 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1088 239 ProSitePatterns Ubiquitin domain signature. 76 101 IPR019954 -
Lele06g1088 239 Gene3D - 126 160 - -
Lele06g1088 239 SUPERFAMILY Ubiquitin-like 68 125 IPR029071 -
Lele06g1088 239 ProSiteProfiles Ubiquitin domain profile. 67 125 IPR000626 GO:0005515
Lele06g1088 239 PRINTS Ubiquitin signature 171 191 IPR019956 -
Lele06g1088 239 PRINTS Ubiquitin signature 213 234 IPR019956 -
Lele06g1088 239 PRINTS Ubiquitin signature 192 212 IPR019956 -
Lele06g1088 239 Pfam Ubiquitin family 163 234 IPR000626 GO:0005515
Lele06g1088 239 Pfam Ubiquitin family 67 121 IPR000626 GO:0005515
Lele06g1088 239 Pfam Ubiquitin family 128 161 IPR000626 GO:0005515
Lele06g1088 239 ProSiteProfiles Ubiquitin domain profile. 126 162 IPR000626 GO:0005515
Lele06g1088 239 ProSiteProfiles Ubiquitin domain profile. 161 236 IPR000626 GO:0005515
Lele06g1088 239 FunFam Ubiquitin-60S ribosomal L40 fusion 161 238 - -
Lele06g1088 239 SMART ubq_7 46 121 IPR000626 GO:0005515
Lele06g1088 239 SMART ubq_7 161 232 IPR000626 GO:0005515
Lele06g1088 239 CDD Ubl_ubiquitin 161 236 - -
Lele06g1088 239 Gene3D - 161 239 - -
Lele06g1088 239 Gene3D - 55 125 - -
Lele06g1088 239 SUPERFAMILY Ubiquitin-like 160 236 IPR029071 -
Lele06g1088 239 FunFam Polyubiquitin-C 60 125 - -
Lele06g1088 239 PANTHER UBIQUITIN 126 161 - -
Lele06g1088 239 SUPERFAMILY Ubiquitin-like 123 162 IPR029071 -
Lele06g1088 239 FunFam Polyubiquitin-C 126 159 - -
Lele06g1088 239 ProSitePatterns Ubiquitin domain signature. 187 212 IPR019954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1088 Lele-ChrLele06 6784322 6785480 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1088 161 236 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 94.737 1.18e-45 147