Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1087 ATGCTAACACACCTCTTAACACCTGCTGAGTGCCCCTTTGTTATCATAGTCCAGACTGGAAGGCTCTCTCCCTGTTTCAGTGGGGAGAGGCAATCTGTGAGTAGATGGCTTCAAATGATTTCTTGCTTTGCAGTGAATGTTATGGGACATAGACATTTATATAGCATATCTCAGATGCTTGGGAGTGAGCATGAGCAGGATTGGAATTATATGCATACTGATCAGCATAATGTGCAACTAGGTAGGGCTAGCGCTTCAGAGAACGGTTCTTCTATTTATCCAGTAGAAAATATGTCTATAGATGGCAGCTCTTTGGCTGCTTCTTGGAATAATGCCACAATGCCAAATGGATATGCGCCCTCAAGTTTCAACGTTGAATTACCCCCTCATCAATCAGATGCATCAAGATCTTCTCATGATCATTTTTTGTGCTCATCAAATCCTGGAGCCTTTTTCACCGTTTCTGAAAACTATGCTCACCAGCCTTCTTCCAATTATGATAGGCAAGCATTTCATGTTGCCGATGGTGGTTTCTTTGATTTTACAATGGGAAATGGAAGAGGGCCTCACAAAAGAAAGAGCCCTGGAATTCCTTCTGTATGTGAGAGAGGCAGCACAAGCAGATATTTCAGCGCAGGAAGCTCAACTGATCTCCCCATGTCTTCAGAAATAAGGCAGGAGAAGCCAAGCTTGGATTTTCAATATCTGCCTTTGGATCATGTTACTATGACACCCCCCTTCAGAGGCAGTGGCCTTTCAATAAGGGGTGAGGGTTCTTTAAGGAATGTTAGAAGTCGTTCTGCACTTGATTTGGAATCCAACCTTGCTAGGACGCATTTATCTAGCAACCATTTGCACAACTTATCTTCTGGTCCTTCCACTGACCATTCTAGCGCACTGGGTCTTTCTGGTCATAGTTCTAGTACTATGACAAGGGACTGGAGCCAAATGAACATGTCTCCTGCTCATGGGAGGGTATTATTATCTGAATCAAGTGGATATAATCATGAACCAAGTCGCTTGCTAGTTGGAAGTGGTGTTAGTAATGCTTCGGTGGATGCTGGGAGTTACCATCATGAATATAATACAAGCATAAATCCTACTGTTCCTCAAAGTTTTCACAGTAACATCACTCACCCTGCTAGGGGAGTTCGAAGTAATTATTCCCAAAGATCTACTCCAACACCAACTCCAACTCCAACTTTTAGAGCCTCTTCAAGTTCATGTGTGGAACATATGGTGCCTTCAGATGGTGGATTGCACATGGGAGCTGAAGGTTTTATGTCTAGACATCCAAGACCATTGACTGCCATCAGTTGGCGGAATAGTGATAGAAATGGGAGGTCGAGGATATCTAGCGAGAGATATCAATCATTGGCTGATGAGGCTATTCTTCATGATCGATTTTCCTCTGAGGGTTTCATGGTTGTTGATCGGGCACCGCAATATGGTTCTCGAAATATGATTGATCAGCATAGAGAGATGAGGATGGACATAGACAACATGAGTTATGAGGAATTACTTGCTCTGGGAGAGAGGATTGGTCATGTCAGCACAGGATTGTCTGAGAACATGATTTCCAAGTGTTTGACAGAATCAATATATTGCTCATCTGAGCAGAGTCAAGAGGAAGGAAGTTGTGTAATCTGCCTGGAAGAGTACAAGTACATGGACGATGTTGGGACACTGAGAAGTTGTGGTCATGACTACCATGTGAGCTGCATTAGAAAGTGGTTATCAATGAAGAACATGTGTCCTATCTGCAAAGCTTCTGCACTTCCTGATGATATGAAGGATAGATAA 1803 0.4309 MLTHLLTPAECPFVIIVQTGRLSPCFSGERQSVSRWLQMISCFAVNVMGHRHLYSISQMLGSEHEQDWNYMHTDQHNVQLGRASASENGSSIYPVENMSIDGSSLAASWNNATMPNGYAPSSFNVELPPHQSDASRSSHDHFLCSSNPGAFFTVSENYAHQPSSNYDRQAFHVADGGFFDFTMGNGRGPHKRKSPGIPSVCERGSTSRYFSAGSSTDLPMSSEIRQEKPSLDFQYLPLDHVTMTPPFRGSGLSIRGEGSLRNVRSRSALDLESNLARTHLSSNHLHNLSSGPSTDHSSALGLSGHSSSTMTRDWSQMNMSPAHGRVLLSESSGYNHEPSRLLVGSGVSNASVDAGSYHHEYNTSINPTVPQSFHSNITHPARGVRSNYSQRSTPTPTPTPTFRASSSSCVEHMVPSDGGLHMGAEGFMSRHPRPLTAISWRNSDRNGRSRISSERYQSLADEAILHDRFSSEGFMVVDRAPQYGSRNMIDQHREMRMDIDNMSYEELLALGERIGHVSTGLSENMISKCLTESIYCSSEQSQEEGSCVICLEEYKYMDDVGTLRSCGHDYHVSCIRKWLSMKNMCPICKASALPDDMKDR 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1087 600 MobiDBLite consensus disorder prediction 283 315 - -
Lele06g1087 600 SUPERFAMILY RING/U-box 537 594 - -
Lele06g1087 600 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 512 593 - -
Lele06g1087 600 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 512 593 IPR013083 -
Lele06g1087 600 Pfam Ring finger domain 546 589 IPR001841 -
Lele06g1087 600 SMART ring_2 547 588 IPR001841 -
Lele06g1087 600 CDD RING-H2_PA-TM-RING 547 589 - -
Lele06g1087 600 MobiDBLite consensus disorder prediction 376 408 - -
Lele06g1087 600 ProSiteProfiles Zinc finger RING-type profile. 547 589 IPR001841 -
Lele06g1087 600 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 187 593 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1087 Lele-ChrLele06 6780639 6783827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1087 48 599 C3H Transcription Factor Family AT2G37150 41.930 1.06e-109 338
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1087 06 6780639 6783827 Lele06g1087 06 6780639 6783827 ECH
Lele06g1087 06 6780639 6783827 Lele07g1268 07 7692797 7698665 hybridization
Lele06g1087 06 6780639 6783827 Lele08g1071 08 6791165 6793620 hybridization