Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1080 ATGGGTAACATAGGAAGTAGCAGCGCTAACGGTCGACGGAGAAGCAATAGCAGACAGAGTCATCCGCCGCCGCCGGTTAGGCCGCAGCCAGAGATCGCGTCGAATCGGCCTGTGCATCCAGCATCTACACTTCAGATATCGCAATACCCAAACTCGAATCCTTCCCCGTATTTCCAGTACCCAGGTCACTATTCCGCACCCCATCAGGCTATGCCGGCGCCTTTGCCTGCTCCTCTCGATCACCACCATCGTGCGAGGCCTCATACACAAACGGACCCATCGTGGGCGGGTGCCAGTTACCATTGCGGGCCTGCTATGCCTCTGCCTCCACCATGTGTAGAACATCAGAAGGCGGTTACCATAAGGAACGATGTTAATGTCAAGAAGGAGACTCTAAGGATTGAACCCGATGAACAAAATCCTGGGCGGTTCCTTGTTGCATTCACATTTGATGCCACCGTTGATGGGAGCATCACCATTCTTTTCTTTGGTAAAGAAGATGGTGGCTGCAACCTCACGCCAATGAAGCAGAATATTCTGGCCCCCGTAACTGTAAGTTTCCAGCAAGGTCTCGGTCAGCAGTTTAGGCAGCCAATTGGAACTGGTATTGACTTTTCAATATTTGAGGAGTCAGAATTATCAGGAGTGGGTGGAATAGATGTGTTCCCTCTAGCAGTGAAAGCAGATGCATCCTGTGATAAACAAGACGGATCAAATGAAAATTTAACATCTGGTAACAGAAACTCTCAGATAACTCTAGCAGCATTTGAGAAGGAGAAAGGAGAATTCCGGGTAAAGGTAGTTAAGCAGATCTTATGGGTAAATGAAATGAGGTATGAACTGCAGGAGATATATGGTGTTGGAAATTCAGTGGAGAGTGACTTGGACGAGAATGATTCTGGAAAGGAGTGTGTCATCTGCCTCTCAGAGCCACGAGACACAACTGTTCTTCCCTGCAGACACATGTGCATGTGTAGTGGGTGTGCTAAGGTTCTGAGGTTTCAGTCGAATAGATGCCCAATTTGCAGACAGCCAGTTGAGAGGCTTTTGGAGATGAAGGTCAATAATGATAACCGACCTGAGGAATGA 1089 0.483 MGNIGSSSANGRRRSNSRQSHPPPPVRPQPEIASNRPVHPASTLQISQYPNSNPSPYFQYPGHYSAPHQAMPAPLPAPLDHHHRARPHTQTDPSWAGASYHCGPAMPLPPPCVEHQKAVTIRNDVNVKKETLRIEPDEQNPGRFLVAFTFDATVDGSITILFFGKEDGGCNLTPMKQNILAPVTVSFQQGLGQQFRQPIGTGIDFSIFEESELSGVGGIDVFPLAVKADASCDKQDGSNENLTSGNRNSQITLAAFEKEKGEFRVKVVKQILWVNEMRYELQEIYGVGNSVESDLDENDSGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQSNRCPICRQPVERLLEMKVNNDNRPEE 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1080 362 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 303 343 IPR045195 -
Lele06g1080 362 Pfam Zinc finger, C3HC4 type (RING finger) 302 348 - -
Lele06g1080 362 PANTHER MAHOGUNIN 1 356 IPR045194 GO:0061630
Lele06g1080 362 PIRSF SBP1_RNase_bind 230 354 IPR017066 -
Lele06g1080 362 PIRSF SBP1_RNase_bind 15 94 IPR017066 -
Lele06g1080 362 MobiDBLite consensus disorder prediction 36 59 - -
Lele06g1080 362 SUPERFAMILY RING/U-box 303 349 - -
Lele06g1080 362 SMART ring_2 304 342 IPR001841 -
Lele06g1080 362 MobiDBLite consensus disorder prediction 1 20 - -
Lele06g1080 362 FunFam probable E3 ubiquitin-protein ligase LOG2 288 353 - -
Lele06g1080 362 MobiDBLite consensus disorder prediction 1 95 - -
Lele06g1080 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 352 IPR013083 -
Lele06g1080 362 ProSiteProfiles Zinc finger RING-type profile. 304 343 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1080 Lele-ChrLele06 6734754 6736765 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1080 94 323 C3H Transcription Factor Family AT3G09770 59.833 8.03e-94 282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1080 06 6734754 6736765 Lele06g1080 06 6734754 6736765 ECH
Lele06g1080 06 6734754 6736765 Lele07g1258 07 7637187 7639345 hybridization
Lele06g1080 06 6734754 6736765 Lele08g1063 08 6748344 6751455 hybridization