Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1078 ATGCTTGTTCTCTGGCTAATTAACGGGTGTCCGTTATTTTGTGATCGATGTTCAAGGGGCTATCTTGCTCCGGAGTATGCCACCACTGGAAAGTTGACGCGAAAATCAGATGTGTATAGCTTTGGAGTATTACTCTTGCAAATTGTTAGCGGCCAAGCAGCAGTTGATGCTTATCAGGATGAGGATCGTTTCCTAGTAGAGAAGGTGTGGGCAGCTTATAGAGCAAACGAGCTAGTAAAAATGGTGGACCCTCTGATTACGACTATCAACTTGGTAGCAGAAGAAGCAATTCGATTCCTGAAAGTGGGGCTGCGTTGCGTGCAAGAAACTGCCAAGCATCGGCCAAGAATGACAGAGGCCGTTGAAATGCTGAGTAGCAATAAGAATAATGTCATGGAAGGTGTTGTAATTTCAAAACCAGGCTTTGTTGCTGATCTCAGGAACATCAAAATAAGGCAGCAAATACCTGAACTAAGTCCCGAATCTATTTCAAGTGGAGCAAGCCAGGGCATTTGGAGTTCGGTCATTGTCGCCCGTTAA 540 0.45 MLVLWLINGCPLFCDRCSRGYLAPEYATTGKLTRKSDVYSFGVLLLQIVSGQAAVDAYQDEDRFLVEKVWAAYRANELVKMVDPLITTINLVAEEAIRFLKVGLRCVQETAKHRPRMTEAVEMLSSNKNNVMEGVVISKPGFVADLRNIKIRQQIPELSPESISSGASQGIWSSVIVAR 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1078 179 Pfam Protein kinase domain 17 122 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele06g1078 179 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 19 156 - -
Lele06g1078 179 SUPERFAMILY Protein kinase-like (PK-like) 12 132 IPR011009 -
Lele06g1078 179 Gene3D Transferase(Phosphotransferase) domain 1 12 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1078 Lele-ChrLele06 6727408 6728060 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1078 18 150 Receptor kinase-like Gene Family AT4G23140 39.130 3.38e-22 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lele06g1078 PK_Tyr_Ser-Thr 4.3e-08 CL0016