Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1073 ATGATTACGTTTAAGGATTCCAAAGAAAAACTGAAAGAGGAGGTGGACAAGTGTTTGGATGCTCAGCTATGGCATGCTTGTGCTAGTGGGATGGTTCAAATGCCATCAGTTAATAGTAAAGTTTTTTACTTTCCTCAAGGTCATGCAGAGCATTCATGTGCAACAGTGGACTTCAACACTTGTCCCAAGGTTCCACCTCAGATTCTATGTACAGTTATGGCTATCAAATACATGGCTGATCCTGACACTGACGAGGTTTATGCCAGAATTAAGCTTCTTCCTCTTAATGCAAATGAAGTTGATTATGGTGATCGAATTGGCGAAATGAATGGTTCTGAAACGCAAAATAAAGTTCCTTCATTTGCAAAAACCTTAACACAATCAGATGCCAACAATGGTGGTGGGTTCTCTATTCCTAGATATTGTGCTGAGACCATTTTCCCTCGCTTAGACTACTCTGCAGATCCTCCCGTTCATACCATCCTTTTTAAAGATGTTCATGGAGGAACATGGAAATTCAGGCACATTTATAGAGGCACCCCGAGGCGCCATCTCCTTACAACAGGATGGAGCACTTTTGTACATCATAAAAAGTTGGTTGCTGGTGATTCTATTGTATTTTTGAGAGCAAAAAATGGAGATCTCTGTGTTGGAATTCGACGAGATAAAAGAGGAATGAGTGGCATTCCAAACTCTTATGATAAAAAGTTACTGAGAAATGTTAATAGCAATGGATTGAGCTCGAGTGAGGATGCTATGGGAAGAATCAGAAGAGGTAAAGTAAGGGCCGAAGCAGTGGTTGAAGTTGCAACTCTTGCTGCTAAAGGTCAGCCATTTGAGGTTGATTATTACCCGAGGACAAGTGCTCCAGAGTTTTGTGTGAAGGCCTCCTTGGTTATAGCAGCTCTTCAGATTAGGTGGTTCTCTGGAATTAGGTTGAAGATGGCCTTTGAAACTGACGATTCCTCGCGTATAAGTTGGTTCATGGGAACACTATATCTTCAAATCAAGTTGCTGATCCACTTTGCTGGCCTGATTCCCCTTGGAGGCTTCTCCAGATCTGCTAAAGAATGTGAAAAGGAAAGTTCTCCTGCTGGCATGCAGGGAGCCAGGCGTGCTTATTATGGTCTATCCTTATCTGATCTCCACCTCAATAAACTGCAATCCAGTGTTTTTCTGACTAGTTTTCAGCCTCCTGATCACCCTGCATCACCCTTGAGGATCCTCAATAACCCCACAGTGAAAGAACTTAGCATGAGTAAAAGCATATCTTGTGTAATACCTTGGGAATGTTCTGCTCAATCTTCAAAGAAACAGGACGATATGAAGACAACCCATCATCAGCTTATGCTTTTTGGCAGAACTATTCTTACAGAAAATAGTTCATCAGATGGAAATGCTGATAACTTGACCAAGTTTTCTAATCTCCAATATGACAAGGATAATTTAGAGACTGGTCACATTAAAGTATTTGTGGAAACAGAAGATGTGGGTCACCATAGACCTCTCGTTGCTGGGGTCTATGATGAATTGTATGCTAAGTTGGAAGACATGTTCAGCATAGAAAAATCCGAAATGGCCCAAGCCCAATCTCAACTCACTCAACCGACGCCAATCCTACAATCTGCAGCTCCATCTCCAAACGACGTCCCAGCATCTTTAGTTTGCCCTAACATTCGATCTTCTTCCCACCTCCGTCTCACCTACTTCTCGAATTTCTTCCCAAAGGTTGGAGATAAAGATAATCTGTATCTTGTTCACGATCAATTGCAAAGAATTGGAATTAGGGTTTCGGGCTGTGTGAGTGAGTCGAAGATGATTGAGGTCGTCTTGAACGATCGATTGGGTAAGAAGGTCAGGGTGAAATGCAACGATGATGACACCATAGGCGACCTGAAGAAGCTGGTGGCGGCGCAGACTGGCACTAGAGCTGACAAAATTCGCATTCAGAAGTGGTACACCATTTACAAGGATCATATCACTCTGAAAGATTACGAAATTCACGATGGCATGGGCCTCGAACTCTACTACAATTAA 2037 0.4246 MITFKDSKEKLKEEVDKCLDAQLWHACASGMVQMPSVNSKVFYFPQGHAEHSCATVDFNTCPKVPPQILCTVMAIKYMADPDTDEVYARIKLLPLNANEVDYGDRIGEMNGSETQNKVPSFAKTLTQSDANNGGGFSIPRYCAETIFPRLDYSADPPVHTILFKDVHGGTWKFRHIYRGTPRRHLLTTGWSTFVHHKKLVAGDSIVFLRAKNGDLCVGIRRDKRGMSGIPNSYDKKLLRNVNSNGLSSSEDAMGRIRRGKVRAEAVVEVATLAAKGQPFEVDYYPRTSAPEFCVKASLVIAALQIRWFSGIRLKMAFETDDSSRISWFMGTLYLQIKLLIHFAGLIPLGGFSRSAKECEKESSPAGMQGARRAYYGLSLSDLHLNKLQSSVFLTSFQPPDHPASPLRILNNPTVKELSMSKSISCVIPWECSAQSSKKQDDMKTTHHQLMLFGRTILTENSSSDGNADNLTKFSNLQYDKDNLETGHIKVFVETEDVGHHRPLVAGVYDELYAKLEDMFSIEKSEMAQAQSQLTQPTPILQSAAPSPNDVPASLVCPNIRSSSHLRLTYFSNFFPKVGDKDNLYLVHDQLQRIGIRVSGCVSESKMIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRADKIRIQKWYTIYKDHITLKDYEIHDGMGLELYYN 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1073 678 ProSiteProfiles Ubiquitin domain profile. 607 678 IPR000626 GO:0005515
Lele06g1073 678 SUPERFAMILY DNA-binding pseudobarrel domain 116 221 IPR015300 -
Lele06g1073 678 CDD Ubl_UBL5 606 676 - -
Lele06g1073 678 Coils Coil 512 532 - -
Lele06g1073 678 FunFam Auxin response factor 119 223 - -
Lele06g1073 678 ProSiteProfiles B3 DNA-binding domain profile. 121 223 IPR003340 GO:0003677
Lele06g1073 678 SUPERFAMILY Ubiquitin-like 603 678 IPR029071 -
Lele06g1073 678 FunFam Ubiquitin-like protein 5 606 678 - -
Lele06g1073 678 Gene3D - 587 678 - -
Lele06g1073 678 Pfam Auxin response factor 270 332 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lele06g1073 678 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 332 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lele06g1073 678 SMART B3_2 121 223 IPR003340 GO:0003677
Lele06g1073 678 Gene3D - 118 222 IPR015300 -
Lele06g1073 678 CDD B3_DNA 119 221 IPR003340 GO:0003677
Lele06g1073 678 Pfam B3 DNA binding domain 121 221 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1073 Lele-ChrLele06 6681072 6685016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1073 11 332 B3 DNA Binding Superfamily AT4G30080 64.012 2.48e-142 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lele06g1073 B3 2.2e-21 CL0405