Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele06g1034 | ATGCCTCGCTGCCGGAGGGGGTACATACACGTCGTCAACAACGACTACACGCACTGGGAGATGTACGCGATCGGAGGTAGTGGGAACCCTACCATCAACAGCCAGGGGAATCGGTACACGGCGCCGGTGAATCCGTTCGCGAAGGAGGTGACCAAGAGAGTGGACACGGGGGAAGGGAAGTGGAAGGGGTGGAATTGGAGATCGGAAGGCGACATGATGGTAAATGGAGCATTCTTCGTTGCTTCCGGCGAAGGGGTGGAGGTCAAGTACGAGAAGGCCTACAGTGTGGAGCCAAAGTCCGCCGATCACATTGATTTCCTCGTAATGCACGCCGGCGTGCTCGGCGTTTCCAGGGACAACAATCTGGGGATGTGGAGGAGGGGTCCGAACGGAGAAGGGGATGAGATAACAGTGACAGGCCCTGAATACACCGACGATATGGCGGGGACGACGAGGTTGATGCCGAAGCCGTATAGAGTGGTCGTGATATGGTGTCTGATAGCATTCTCGTGGGGTTTATTATGTGAATTATGA | 534 | 0.5562 | MPRCRRGYIHVVNNDYTHWEMYAIGGSGNPTINSQGNRYTAPVNPFAKEVTKRVDTGEGKWKGWNWRSEGDMMVNGAFFVASGEGVEVKYEKAYSVEPKSADHIDFLVMHAGVLGVSRDNNLGMWRRGPNGEGDEITVTGPEYTDDMAGTTRLMPKPYRVVVIWCLIAFSWGLLCEL | 177 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele06g1034 | 177 | PRINTS | Pollen allergen Amb family signature | 93 | 116 | IPR018082 | - | |
| Lele06g1034 | 177 | PRINTS | Pollen allergen Amb family signature | 64 | 88 | IPR018082 | - | |
| Lele06g1034 | 177 | PRINTS | Pollen allergen Amb family signature | 22 | 41 | IPR018082 | - | |
| Lele06g1034 | 177 | Gene3D | - | 1 | 115 | IPR012334 | - | |
| Lele06g1034 | 177 | PANTHER | PECTATE LYASE 18-RELATED | 1 | 117 | IPR045032 | GO:0030570 | |
| Lele06g1034 | 177 | SUPERFAMILY | Pectin lyase-like | 1 | 116 | IPR011050 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele06g1034 | Lele-ChrLele06 | 6428620 | 6429237 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele06g1034 | 1 | 163 | Polysaccharide Lyase | AT3G53190 | 68.293 | 2.22e-73 | 226 |