Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1030 ATGGAGTGCATCGTGGAGCCGCAGATGTCAGCTCGGGGAATTTCTCAACTAGATGACGGCTTTCATTCTGAGATGGGATATGGCTGCTACGGGTGCTCACACTATAGAAGGAGATGCAAGATAATAGCACCTTGTTGCAATGAAATATTCGACTGCAGACATTGCCATAATGAATCCAAGAATTCGATTGAACTGGACCCTGTTGATCGCCATGACGTTCCTCGTCACAGTTTAAATAGGGTTATCTGTTCCTTGTGTAGCACCGAGCAAGATGTTCAACAGATGTGCATTCGGTGCGGTGTTTGCATGGGAAAGTACTTCTGCTCCAAGTGCAAGTTTTTTGACGATGATGTATCAAAGAATCAGTACCATTGCAATGAATGTGGTATCTGCAGAATTGGAGGCGAGGAGAATTTTTTCCACTGCAACAAATGCGGATGTTGCTATTCAATGTTGTTGAAGGACTCACACCGTTGTGTTGAAAAAGCTATGCATCACAATTGTCCTGTTTGCTTTGAGTTTCTTTTTGATACCACAAAAGACATTACTGTATTGCCATGTGGTCACTCTATCCATCTGGAATGTGTGAGAGGAATGGAGCAGCATTTCCAGTATTCTTGCCCTGTTTGCTCAAAATCTTTTTGTGATATGTCGCGCGTGTGGGAGAGACTGGATCATGAGGTTGCATCCACACCTATGCCAGAAATGTATCAAAATAAGATGGTCTGGATACTATGCAATGATTGTGGGGAAACATCAGAGGTGAGCTTTCACGTTTTGGCGCACAAGTGTATAAAATGCAAATCCTACAACACTAGACTGACGCAAGGTGGACCTGCTTCATCATGCTCATCCAACGTTGAAGAGCTAGTGTAA 876 0.4349 MECIVEPQMSARGISQLDDGFHSEMGYGCYGCSHYRRRCKIIAPCCNEIFDCRHCHNESKNSIELDPVDRHDVPRHSLNRVICSLCSTEQDVQQMCIRCGVCMGKYFCSKCKFFDDDVSKNQYHCNECGICRIGGEENFFHCNKCGCCYSMLLKDSHRCVEKAMHHNCPVCFEFLFDTTKDITVLPCGHSIHLECVRGMEQHFQYSCPVCSKSFCDMSRVWERLDHEVASTPMPEMYQNKMVWILCNDCGETSEVSFHVLAHKCIKCKSYNTRLTQGGPASSCSSNVEELV 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1030 291 Gene3D - 239 280 - -
Lele06g1030 291 Pfam CHY zinc finger 32 113 IPR008913 GO:0008270
Lele06g1030 291 SUPERFAMILY Zinc hairpin stack 104 161 IPR037275 -
Lele06g1030 291 ProSiteProfiles Zinc finger CHY-type profile. 25 101 IPR008913 GO:0008270
Lele06g1030 291 SUPERFAMILY CHY zinc finger-like 28 103 IPR037274 GO:0008270
Lele06g1030 291 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 213 IPR013083 -
Lele06g1030 291 SUPERFAMILY RING/U-box 166 217 - -
Lele06g1030 291 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 27 276 - -
Lele06g1030 291 Pfam Zinc-ribbon 215 273 IPR039512 -
Lele06g1030 291 FunFam RING finger and CHY zinc finger domain-containing protein 1 239 283 - -
Lele06g1030 291 ProSiteProfiles Zinc finger RING-type profile. 168 211 IPR001841 -
Lele06g1030 291 Pfam RING-type zinc-finger 168 208 IPR027370 -
Lele06g1030 291 ProSiteProfiles Zinc finger CTCHY-type profile. 103 167 IPR017921 -
Lele06g1030 291 SMART ring_2 168 210 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1030 Lele-ChrLele06 6414570 6416815 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1030 30 277 C2H2 Transcription Factor Family AT3G18290 40.945 2.05e-54 188