Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1028 ATGCCCAAACCCCCCTCCCGCATAATTACAACTATTATCAATATTGCAAATTTAGCAGCTCCCAGCCTGCCGACGAATAACGATATTTTCCCAAACTTTATAATTCGCTTTTCATTTCTTCTTCTTTCGTTTACCGGAACCTGCTATAGCCTGTTTTGTGAACCTCCTCACTCTCGATATAATGGCTCCTCATCCCCCAACTCTCCCCCGCTGAGAAGGGAGAAGTGGAAACCAGCACTTGCTATTCCTACAGTGTCTGATCTCTCGACACACACCCACACTATGCCGATCCGAAACATCGCCGTCGGTAGGCCTGAGGAGGCAACTCAGGCGGATACCTTGAAGGCCGGCTTGGCCGAGTTCATCTCCACCCTCATCTTCGTCTTCGCCGGTGAAGGCTCCGGCATGGCCTTCAACAAGCTCACTAGCGACGGTGCCACCACCCCCGCCGGTCTCATCTCCGCCTCCATCGCTCACGCCTTCGCCCTGTTCGTCGCGGTCTCCGTTGGCGCTAACATCTCCGGCGGCCACGTCAACCCCGCCGTCACCTTCGGAGCCTTCATCGGAGGCAACATCACCTTGTTGCGAGGCATCGTCTACTGGATCGCTCAGCTTCTCGGTTCCACCGTTGCTTGCTTGCTCCTCAAGTTTGCCACCGGAGGACTGACCACACCGGCTTTTGCACTGTCGTCCGGAGTTGGAGTATGGAACGCCGTGGTGTTCGAGATCGTGATGACATTCGGGTTGGTGTACACCGTGTACGCCACAGCCGTTGATCCGAAGAAGGGCAATTTGGGAGTAATAGCGCCCATCGCGATCGGTTTCATTGTGGGAGCCAACATCCTGGCGGGTGGGGCCTTCGATGGTGCATCCATGAATCCGGCAGTTTCATTCGGGCCAGCGTTGGTGAGCTGGAGCTGGAACAACCACTGGGTCTACTGGGTCGGGCCACTTATCGGCGGTGGGCTCGCTGGGCTCATCTATGAGGTCGTCTTCATCTCCCACTCCCACGAGCAGCTCCCCTCCACTGACTACTAA 1038 0.5607 MPKPPSRIITTIINIANLAAPSLPTNNDIFPNFIIRFSFLLLSFTGTCYSLFCEPPHSRYNGSSSPNSPPLRREKWKPALAIPTVSDLSTHTHTMPIRNIAVGRPEEATQADTLKAGLAEFISTLIFVFAGEGSGMAFNKLTSDGATTPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRGIVYWIAQLLGSTVACLLLKFATGGLTTPAFALSSGVGVWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGVIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWNNHWVYWVGPLIGGGLAGLIYEVVFISHSHEQLPSTDY 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1028 345 Pfam Major intrinsic protein 108 328 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele06g1028 345 FunFam Probable aquaporin TIP1-1 98 345 - -
Lele06g1028 345 SUPERFAMILY Aquaporin-like 108 340 IPR023271 -
Lele06g1028 345 PANTHER AQUAPORIN-8 100 340 IPR034294 -
Lele06g1028 345 ProSitePatterns MIP family signature. 177 185 IPR022357 -
Lele06g1028 345 Gene3D Glycerol uptake facilitator protein. 98 345 IPR023271 -
Lele06g1028 345 CDD MIP 115 331 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele06g1028 345 PRINTS Major intrinsic protein family signature 159 183 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele06g1028 345 PRINTS Major intrinsic protein family signature 115 134 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele06g1028 345 PRINTS Major intrinsic protein family signature 241 259 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele06g1028 345 PRINTS Major intrinsic protein family signature 274 296 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele06g1028 345 PRINTS Major intrinsic protein family signature 311 331 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele06g1028 345 PRINTS Major intrinsic protein family signature 196 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele06g1028 345 TIGRFAM MIP: MIP family channel proteins 119 328 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1028 Lele-ChrLele06 6407400 6408585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1028 95 345 Major Intrinsic Protein MIP AT2G36830 83.267 3.22e-151 424