Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1026 ATGGAGGTCACAGGCCAGGAACTTGTGATGTGGAATAAGGATCATGAAAGCCAAGTCATGAAGGGCAAGCGCACCAAGCGTTCCAGGCTACCCTCTCCACTCAGGCTATCCATGGCTTCTTCTTCTTCTAGCGCCGGCAGGACCAGCACCGAAGAAAATTCCGGCGGGTCATCATCAGTAGTAGATATGGCTACAACCTCGACTGATCATCAATTGAGGGTGACCACCGAAGAAGAAGACATGGCTAATTGTTTGATCCTTCTGGCTCAAGGCCATGCCCGTGACGAACCCTCTTCTCACAACAACCACGATAAGGCTTCCTCTGGGCTATACGTTTATCAGTGCAAGACCTGTGATCGATGCTTCCCTTCTTTCCAGGCACTCGGTGGACACAGAGCCAGCCACAAGAAACAAAAGCCAAACAATTCTGAAGAAAAGATGCAATCTGTTGCATTTGCCAACGAAGAGGCTCATGACCCGTGTGCTCCCACGGACCCAAGCTTCGTCCTCTCATTGCAGATTTCAAATAGGGCTTCGTATAGCAGCAATAGTAACAGTAATAAGTCGAAAGTTCACGAGTGTTCTATATGTGGGGCCGAGTACACCTCTGGGCAAGCTTTGGGGGGTCATATGAGGCGCCACAGAACCTTGGTGAACAATTCACTCCAGCAGCAAGCCAATAACAACAATCCCAAGAATGTTTTCAAGTTGGATTTGAATCTTCCCGCACCAGAAGATGATCACAGAGAATCCAAGTTGCCGTTTCAGTCTCAAGAAAATGTTCTTGTTTTCTCCGCATCTTCTTTGGTGGATTGCCATTATTGA 825 0.4812 MEVTGQELVMWNKDHESQVMKGKRTKRSRLPSPLRLSMASSSSSAGRTSTEENSGGSSSVVDMATTSTDHQLRVTTEEEDMANCLILLAQGHARDEPSSHNNHDKASSGLYVYQCKTCDRCFPSFQALGGHRASHKKQKPNNSEEKMQSVAFANEEAHDPCAPTDPSFVLSLQISNRASYSSNSNSNKSKVHECSICGAEYTSGQALGGHMRRHRTLVNNSLQQQANNNNPKNVFKLDLNLPAPEDDHRESKLPFQSQENVLVFSASSLVDCHY 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1026 274 Pfam C2H2-type zinc finger 191 215 - -
Lele06g1026 274 Pfam C2H2-type zinc finger 112 138 - -
Lele06g1026 274 MobiDBLite consensus disorder prediction 1 67 - -
Lele06g1026 274 SUPERFAMILY beta-beta-alpha zinc fingers 112 214 IPR036236 -
Lele06g1026 274 Gene3D Classic Zinc Finger 110 214 - -
Lele06g1026 274 SMART c2h2final6 192 214 IPR013087 -
Lele06g1026 274 SMART c2h2final6 113 135 IPR013087 -
Lele06g1026 274 ProSiteProfiles Zinc finger C2H2 type domain profile. 113 140 IPR013087 -
Lele06g1026 274 ProSiteProfiles Zinc finger C2H2 type domain profile. 192 214 IPR013087 -
Lele06g1026 274 MobiDBLite consensus disorder prediction 34 67 - -
Lele06g1026 274 ProSitePatterns Zinc finger C2H2 type domain signature. 115 135 IPR013087 -
Lele06g1026 274 ProSitePatterns Zinc finger C2H2 type domain signature. 194 214 IPR013087 -
Lele06g1026 274 PANTHER ZINC FINGER PROTEIN ZAT5 65 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1026 Lele-ChrLele06 6397084 6397908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1026 14 274 C2H2 Transcription Factor Family AT5G03510 42.230 1.64e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele06g1026 zf-C2H2_6 1e-09 CL0361