Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1025 ATGGCGGTTCCAGGGAGGCGCAATGGTCTAAACGACGACGACGACGACAACTTCGAAGATGACAACGCCCTCTTTGAAGAAAATGGCCTTTTGGAGCTTGAGGATTCGGATACGCCTCCTCATCTCCACGACTTAGCCGCCGCCTCTCAGTTTGGTGACCCCGATAACGTCCGCCTCGCTCTAGATAACTTGACTGGAAGAATTGACGAACCTGTGGAAGATGGGGATACGGCTCTACATCTGACCTGCTTATATGGCCATTTATCGTGTGTTCAGCTACTTCTGGAAAGAGGAGCGAACATGGAGTGTAAGGATGAAGACGGTGCTATTCCATTGCATGATGCTTGTGCAGGAGGGTATGCTGAGATAGTCCAACTGCTACTTAACAGAGTTGATAATGCAGAGCATATACGGAGGATGCTTGAATCAGTTGATTCAGAGGGTGATACACCGCTCCATCACGCTGCTAGAGGCGAGCATGTTAACGTCATTAGGTTATTGCTGTCTCATGGGGCATCTCCCACAAAGACAAACTTATATGGAAAGACTCCAGCAGAATTACCTGATCATGGCACAGACGCAAGGAGATTGCTGGAAGCCGCTGTTGCTACTTCCATGCCATCTCTATAG 630 0.4905 MAVPGRRNGLNDDDDDNFEDDNALFEENGLLELEDSDTPPHLHDLAAASQFGDPDNVRLALDNLTGRIDEPVEDGDTALHLTCLYGHLSCVQLLLERGANMECKDEDGAIPLHDACAGGYAEIVQLLLNRVDNAEHIRRMLESVDSEGDTPLHHAARGEHVNVIRLLLSHGASPTKTNLYGKTPAELPDHGTDARRLLEAAVATSMPSL 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1025 209 FunFam BRCA1-associated RING domain protein 1 39 206 - -
Lele06g1025 209 ProSiteProfiles Ankyrin repeat profile. 74 106 IPR002110 GO:0005515
Lele06g1025 209 Pfam Ankyrin repeats (3 copies) 46 130 IPR002110 GO:0005515
Lele06g1025 209 ProSiteProfiles Ankyrin repeat profile. 107 130 IPR002110 GO:0005515
Lele06g1025 209 ProSiteProfiles Ankyrin repeat region circular profile. 107 130 - -
Lele06g1025 209 SUPERFAMILY Ankyrin repeat 45 186 IPR036770 -
Lele06g1025 209 Gene3D - 152 200 IPR036770 -
Lele06g1025 209 SMART ANK_2a 107 136 IPR002110 GO:0005515
Lele06g1025 209 SMART ANK_2a 147 176 IPR002110 GO:0005515
Lele06g1025 209 SMART ANK_2a 74 103 IPR002110 GO:0005515
Lele06g1025 209 PANTHER SOWAH (DROSOPHILA) HOMOLOG 147 202 - -
Lele06g1025 209 ProSiteProfiles Ankyrin repeat profile. 147 179 IPR002110 GO:0005515
Lele06g1025 209 MobiDBLite consensus disorder prediction 1 21 - -
Lele06g1025 209 Gene3D - 40 151 IPR036770 -
Lele06g1025 209 PRINTS Ankyrin repeat signature 75 90 IPR002110 GO:0005515
Lele06g1025 209 PRINTS Ankyrin repeat signature 163 177 IPR002110 GO:0005515
Lele06g1025 209 ProSiteProfiles Ankyrin repeat region circular profile. 74 106 - -
Lele06g1025 209 ProSiteProfiles Ankyrin repeat region circular profile. 147 173 - -
Lele06g1025 209 Pfam Ankyrin repeat 148 178 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1025 Lele-ChrLele06 6392537 6395457 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1025 21 190 Ion Channels AT2G25600 30.806 6.26e-15 71.2