Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1022 ATGGATCGAGACTGGGGTTCCAAGCCTGGGAGTGGAGGAGCCGCCTCCGCTCAGAATGAAGCCATCGACCGTCGAGAGCGTCTTCGCCGACTTGCCCTCGAGACTATTGATCTTGCTAAGGACCCCTATTTCATGCGCAATCATCTGGGGAGCTACGAGTGCAAGCTTTGTCTCACCTTACACAACAACGAGGGCAATTACTTGGCCCACACTCAGGGTAAGCGGCATCAGACTAATCTGGCAAAGAGAGCAGCTCGTGAGGCCAAAGAGGCACCTGCTCAGCCTCAGCCCCACAAGCGTAAAGTTTCGGTTCGCAAGACAGTCAAGATTGGTCGGCCTGGGTATCGAGTGACTAAGCAATTTGATCCAGAGACAAAGCAGAGATCTCTTCTTTTCCAGATTGAATATCCTGAGATTGAAGAACTCACAAAGCCAAGGCATAGATTCATGTCTTCTTATGAGCAGAGGGTTCAACCCTTCGACAAAAGATATCAGTATCTTCTGTTTGCAGCTGAACCGTATGAGACAATTGCTTTTAAGGTTCCTAGCACAGAGATTGATAAGTCCACACCAAAGTTTTTCTCACATTGGGACTCAGACTCAAAAATGTTCACGTTGCAGTTGTATTTTAAGCCCAAGCCACCAGAGGCAAACAAACCACAGCCTCCCTCTACAGCCAATGGCACAGCAGCACCTGGTGTCCCACCAAGGCCTGCACCACCGCCACCTCAAGCTCCGCCACCCCCTCCTCCTCCACCACATGGACTACCTCCTGGTACAGCTGTTGGAAATCCTCCTAGAGCCCCTCCACCTCCAATGCCTGGATCATTGCCTCCTCCTCCTCCTATGTCAAATGGCCCTACACCTACGCCTCCTGGGGGAATGCCACCTCAACCCCCTGTTGCGAGCGGCTCAGCAGCCAGTTTCAACATGGGTTCTAGGCCCCCATCAATGCCACCTCCCCAAAATTATTTAGCCCAACAAATGCAAGGCCAGGGGGTTCGTCCACCTCCACCACCTCCTAGCATGTGA 1032 0.5223 MDRDWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEELTKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYETIAFKVPSTEIDKSTPKFFSHWDSDSKMFTLQLYFKPKPPEANKPQPPSTANGTAAPGVPPRPAPPPPQAPPPPPPPPHGLPPGTAVGNPPRAPPPPMPGSLPPPPPMSNGPTPTPPGGMPPQPPVASGSAASFNMGSRPPSMPPPQNYLAQQMQGQGVRPPPPPPSM 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1022 343 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 110 204 IPR031781 -
Lele06g1022 343 PRINTS Proline rich extensin signature 211 232 - -
Lele06g1022 343 PRINTS Proline rich extensin signature 275 300 - -
Lele06g1022 343 PRINTS Proline rich extensin signature 236 252 - -
Lele06g1022 343 PRINTS Proline rich extensin signature 257 274 - -
Lele06g1022 343 MobiDBLite consensus disorder prediction 233 299 - -
Lele06g1022 343 Gene3D Classic Zinc Finger 46 89 - -
Lele06g1022 343 Gene3D - 93 218 - -
Lele06g1022 343 SMART CactinC_cactus_3 89 217 - -
Lele06g1022 343 Pfam Zinc-finger of C2H2 type 52 76 - -
Lele06g1022 343 SUPERFAMILY beta-beta-alpha zinc fingers 48 83 IPR036236 -
Lele06g1022 343 MobiDBLite consensus disorder prediction 1 21 - -
Lele06g1022 343 MobiDBLite consensus disorder prediction 212 343 - -
Lele06g1022 343 ProSiteProfiles Zinc finger matrin-type profile. 52 82 IPR000690 GO:0003676|GO:0005634|GO:0008270
Lele06g1022 343 SMART ZnF_U1_5 49 83 IPR003604 GO:0003676|GO:0008270
Lele06g1022 343 PANTHER SPLICING FACTOR 3A SUBUNIT 2 1 341 - -
Lele06g1022 343 FunFam Splicing factor 3a subunit 2 94 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1022 Lele-ChrLele06 6376749 6380158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1022 1 228 C2H2 Transcription Factor Family AT2G32600 87.719 4.26e-141 399