Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1019 ATGGACTTGTCAGATTTGAGAAGAGCTGTGGACGAGGTTGAGCTCATCGACGCTCACGCTCACAACTTAGTTGAGCTTAACTCCAACTTCGCTTTCATCCATGCCTTCTCTGAAGCCTCCGGCGACGCCCTTTCTTTCGCCCCCAACTCTATATCCTTCAAGAGAAGTTTAAGAGAAATTGCTGAACTCTATGGATCCCAATGTTCTTTGCAAAGCGTTGAAGAATATCGAAGAGTCTCTGGATTGCAATCCATCTGTTCTAAGTGCTTCAAAGCTGCAAAAATCTCTGCCATACTCATTGATGACGGGATAGAATTGGATAAAAAGCATGATTTAAGGTGGCATGAGAGTTTGACACCTCTTGTTGGTAGAATCTTGAGACTTGAACGGTTGGCCGAGAAAATTCTTGATGAAATCTTTGGATTGAAAAGCATTGCTGCATATCGTACTGGTCTTGAAATCAATACAAAAGTGACGAACATGGATGCAGAGGAGGGTCTCACTGAAGTGCTTCTTGCCGGGAAGCCCGTCCGTATAACAAACAAGAACCTTATTGATTACATCTTCTTGCAAAGTTTGGAAGTTGCTCAGTCCTATGACTTGCCAATGCAGATACACACAGGTGCAGTACTCCATGCCTTGCCCACTTCTAGGATTTTACCAAAAGTCTTAACGTCAAAGTTGCAGTTTCCTTTGCTATTTACTGCTTCTCTCTTTGGGGATACAGATTTGGATATGCGACTATCCAATCCTCTTCATCTCCGTGCAGTTCTTGAGGACAAGAGATTTTCAAAGTGTCGAATAGTTCTTTTACATGCATCCTATCCATTCTCAAGGGAAGCATCATATCTAGCCTCTGTTTACTCCCAGGTGTACCTCGATTTTGGGTTGGCAATTCCAAAGCTTAGTGTTCATGGAATGATATCTTCAGTTAAAGAACTATTAGAGCTGGCTCCAATAAATAAGGTGATGTTCAGTACTGATGGCTATGCATTTCCTGAAACATTCTACTTAGGTGCAAAGAAGTCTCGTGAAGTTGTTTTCTCTGTTTTACGTGATGTATGCATTGATGGTGATCTCTCAGTTCCTGAGGCTGTAGAAGCTGCTAAAGACATCTTTGCACGAAACGCAATCCACTTTTACAAGATTGAATCAGCCACTGGTACTACGATTTCACACAACAACTTGATCCGAAAGTCAAGTATTGCCTTGGAGGCTGATTTGTCACTTGTTCGTCTCATGTGGATCGATATTTCTGGACAGCATAGATGCCGTGTTGTTCCAGGAAAGCGTTTCAATGATGTTGTTAAGGAGCGTGGGGTTGGTATGGCAAGTGCTTGTATAGCAATGCCTTCTTATCTAGATACAACAGTAGAAGGGTCTGGTTTGAATGCAGTCGGTGAAGTAACCCTAATGCCTGATTTGTCTACAAGAAGCAGAATTCCTTGGAGCAAGCAAGAGGAAATGGTTTTATGTAATTTGCAAACTAAATCAGGTGAAGCATGGGAATATTGCCCAAGGGAGGCCTTAAGAAGAGTTTTAAAGATTCTGAAAGATGAATTTGACTTGGCAGTGAATACAGGGTTTGAGAATGAATTTTATCTCTTGAAGAGTATAACTAGGGAAGGGAAAGAAGAATGGGTGCCGATTGACCTGACTCATTACTCCTCCACATCAGCATTTGATGCCACATCCCCCATATTTCAGGAAATCATTGCTGCTCTTCATTCCTTGGGTATTTTTGTGGAACAGGTACATGCAGAAGCCGGAAAAGGTCAATTTGAATTGATTCAGAGCTATACGGCCTGTACTGAAGCTGCGGATGAGTTAATCTACACTCGTGAGGTTATTAAGGCAATTGCAAGAAAGCATGGGTTGCTGGCAACTTTTATGCCAAAGTGCTTTTTGGATGACATTGGCTCCGGAGCTCATGTGCATCTTAGCCTGTCACAGAATGGTCAAAACGTATTTATGGCATCGGATGCATCGTCTAAATATGGAATATCGGCTATAGGAAAAGAATTCATGGCAGGAGTTCTGCATCATCTTTCTTCAATTTGGGCATTTATAGCAGCTCATCCTAACAGTTACCAACGTCTACAACCGAATACGTGGAGCGGTGCATTCAAGTGCTGGGGAAATGAAAATAAAGAAGCGCCACTAAGAGCTGCATCTCCGCCTGGAATTCCTGATGGTCTTGTCAGTAACTTTGAGATTAAATCATTTGACGCTACCGCGAATACACATCTGGGCTTGGCCGCCATTGCTGCTGCTGGAATTGATGGCCTTCGTAGGCATCTTTCTCTTCCTGAACCTGTTGATCCAGCGAACTATCCAGAAAAACTTGAGAGGTTGCCGAGTACACTTTCTGAATCTCTGGAGGCTCTTGATAAAGATGATGGCATCTTTAAAGAATTAATTGGTGAAAAGTTGCTGACTGCAATAAAGGAACTTCGAAAGTGCTTCCGATTTTTGCGGTCCAAAACCAAGATAGTAATCGTTGCTTTCGTTCCTTCTCTTGTATTTCCCGTTAATGCGGATTTGTGGACTCTACTTATAATGGGCGTTCTTTCCCAGCCACGTTTTAAGCCCAGCCCTTGGAAGCAAGCTCATGCCACTTTCTATGAAGGAGGCTCTTCAACATATGGAGGAGCATGTGGGTACGAGGATGTAGTGAAAGCAGGATACGGACTTGAAACAGCAGCATTGAGCCAAGTTCTGTACAAGGAAGGAGCCACATGTGGTGCATGCTACGAAATCCAATGCGTGAACTCACCATGGTGTAAACACATAAAACCTTCCATTTTTGTGACGGCCACCGATTATTGCCCTCCCAATTTCAACCTCCCCAGTGACAATGGAGGATGGTGCAACCCTCCCCGTGAGCACTTCGACTTAGCCAAGCCTTCTTACCTTGACATTGCCGAGTACCAAGGTGGCATTGTCCCCATCAACTACCGCAGGGTGGCATGCAAGAGGCAAGGAGGCATTAGGTTCACCATAACAGGGAATCCATACTTCTATCTGGTGTCAGTGTGGAATGTGGGAGGAGCAGGGGATGTGGTGGGCGTGGAAGTGAAGGGAAGTAAGAAGGTGAAATGGACAGTTCTGAAGAGGAATTGGGGTCAGAAGTGGGACACCAATGATGTGTTACTGGGAGAATCCTTGACGTTCCGTGTTAGAACAAGTGATGGAAGGGCCTCCACTTCGTGGCACGTCACTCCTGAGAATTGGCAGTTTGGGATTACCTACGAAGGCAAGAACTTCAAGTGA 3273 0.4415 MDLSDLRRAVDEVELIDAHAHNLVELNSNFAFIHAFSEASGDALSFAPNSISFKRSLREIAELYGSQCSLQSVEEYRRVSGLQSICSKCFKAAKISAILIDDGIELDKKHDLRWHESLTPLVGRILRLERLAEKILDEIFGLKSIAAYRTGLEINTKVTNMDAEEGLTEVLLAGKPVRITNKNLIDYIFLQSLEVAQSYDLPMQIHTGAVLHALPTSRILPKVLTSKLQFPLLFTASLFGDTDLDMRLSNPLHLRAVLEDKRFSKCRIVLLHASYPFSREASYLASVYSQVYLDFGLAIPKLSVHGMISSVKELLELAPINKVMFSTDGYAFPETFYLGAKKSREVVFSVLRDVCIDGDLSVPEAVEAAKDIFARNAIHFYKIESATGTTISHNNLIRKSSIALEADLSLVRLMWIDISGQHRCRVVPGKRFNDVVKERGVGMASACIAMPSYLDTTVEGSGLNAVGEVTLMPDLSTRSRIPWSKQEEMVLCNLQTKSGEAWEYCPREALRRVLKILKDEFDLAVNTGFENEFYLLKSITREGKEEWVPIDLTHYSSTSAFDATSPIFQEIIAALHSLGIFVEQVHAEAGKGQFELIQSYTACTEAADELIYTREVIKAIARKHGLLATFMPKCFLDDIGSGAHVHLSLSQNGQNVFMASDASSKYGISAIGKEFMAGVLHHLSSIWAFIAAHPNSYQRLQPNTWSGAFKCWGNENKEAPLRAASPPGIPDGLVSNFEIKSFDATANTHLGLAAIAAAGIDGLRRHLSLPEPVDPANYPEKLERLPSTLSESLEALDKDDGIFKELIGEKLLTAIKELRKCFRFLRSKTKIVIVAFVPSLVFPVNADLWTLLIMGVLSQPRFKPSPWKQAHATFYEGGSSTYGGACGYEDVVKAGYGLETAALSQVLYKEGATCGACYEIQCVNSPWCKHIKPSIFVTATDYCPPNFNLPSDNGGWCNPPREHFDLAKPSYLDIAEYQGGIVPINYRRVACKRQGGIRFTITGNPYFYLVSVWNVGGAGDVVGVEVKGSKKVKWTVLKRNWGQKWDTNDVLLGESLTFRVRTSDGRASTSWHVTPENWQFGITYEGKNFK 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1019 1090 SUPERFAMILY Metallo-dependent hydrolases 184 383 IPR032466 -
Lele06g1019 1090 Gene3D - 854 992 IPR036908 -
Lele06g1019 1090 SUPERFAMILY PHL pollen allergen 993 1086 IPR036749 -
Lele06g1019 1090 Pfam Lytic transglycolase 900 986 IPR009009 -
Lele06g1019 1090 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 1006 1086 IPR007117 -
Lele06g1019 1090 Gene3D - 404 499 IPR036651 GO:0004356|GO:0006542|GO:0006807
Lele06g1019 1090 ProSiteProfiles Glutamine synthetase (GS) catalytic domain profile. 506 859 IPR008146 GO:0004356|GO:0006807
Lele06g1019 1090 SUPERFAMILY Glutamine synthetase, N-terminal domain 405 502 IPR036651 GO:0004356|GO:0006542|GO:0006807
Lele06g1019 1090 SUPERFAMILY Barwin-like endoglucanases 866 1014 IPR036908 -
Lele06g1019 1090 Pfam Expansin C-terminal domain 997 1075 IPR007117 -
Lele06g1019 1090 Gene3D - 996 1089 IPR036749 -
Lele06g1019 1090 SMART dpbb_1 900 986 IPR007112 -
Lele06g1019 1090 Pfam Amidohydrolase 193 382 IPR006680 GO:0016787
Lele06g1019 1090 FunFam Glutamate-ammonia ligase 506 822 - -
Lele06g1019 1090 PRINTS Expansin signature 1007 1028 IPR002963 GO:0009664
Lele06g1019 1090 PRINTS Expansin signature 995 1007 IPR002963 GO:0009664
Lele06g1019 1090 PRINTS Expansin signature 895 909 IPR002963 GO:0009664
Lele06g1019 1090 PRINTS Expansin signature 954 971 IPR002963 GO:0009664
Lele06g1019 1090 PRINTS Expansin signature 971 984 IPR002963 GO:0009664
Lele06g1019 1090 PRINTS Expansin signature 1043 1064 IPR002963 GO:0009664
Lele06g1019 1090 PRINTS Expansin signature 1072 1088 IPR002963 GO:0009664
Lele06g1019 1090 PRINTS Expansin signature 935 945 IPR002963 GO:0009664
Lele06g1019 1090 SUPERFAMILY Glutamine synthetase/guanido kinase 503 818 IPR014746 GO:0003824
Lele06g1019 1090 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 883 996 IPR007112 -
Lele06g1019 1090 PANTHER GAMMA-GLUTAMYLPUTRESCINE SYNTHETASE 334 820 - -
Lele06g1019 1090 Gene3D - 3 387 - -
Lele06g1019 1090 Pfam Glutamine synthetase, catalytic domain 504 819 IPR008146 GO:0004356|GO:0006807
Lele06g1019 1090 Gene3D Glutamine synthetase/guanido kinase, catalytic domain 506 821 - -
Lele06g1019 1090 SMART Gln_synt_C_2 503 759 IPR008146 GO:0004356|GO:0006807
Lele06g1019 1090 PRINTS Expansin/Lol pI family signature 866 881 IPR007118 GO:0005576
Lele06g1019 1090 PRINTS Expansin/Lol pI family signature 979 995 IPR007118 GO:0005576
Lele06g1019 1090 PRINTS Expansin/Lol pI family signature 1034 1048 IPR007118 GO:0005576
Lele06g1019 1090 PRINTS Expansin/Lol pI family signature 1072 1086 IPR007118 GO:0005576
Lele06g1019 1090 PRINTS Expansin/Lol pI family signature 904 922 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1019 Lele-ChrLele06 6350504 6360931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1019 841 1090 Expansin Gene Family AT3G55500 58.661 7.66e-103 322