Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1005 ATGCTTCTCTATTGCATACATCTAGCAGTGCGTCACATAGAGAACCAGCTTCGATGCAGCGTGACACTAATAAGGCAAAGCCTTCCAAAGACTAATCAACGCCATAACACAATGTCGGTGCCTCAGTGGCTTGAGCCCCTACTAACCACTTCCTTCTTCAGCGTCTGCCGCTTCCACGGCGACGCCGCCAGGAGCGAGTGTAACATGTTCTGTCTCGACTGCAATCGCGACGCATTTTGCTACTATTGCCGTTCCTCCAGACACAAGGATCATCAAGTCATTCAGATAAGGCGATCTTCGTATCACGATGTGGTGAGAGTATCTGAGATTCAGAAGGTGCTGGACATAAGCGGGGTTCAGACGTATGTAATAAACAGCGCGAGAGTGTTGTTCCTGAACGAGAGGCCTCAGCCAAAATCTGGGAAAGGAGTAGCTCATATTTGTGAGATTTGTGGAAGAAGCCTCTTGGACCCATTCCGCTTCTGTTCTCTGGGTTGTAAGCTTGTGGGAGTGAAGAGAAATGGGGACGCAAACTTTGCTTTGGAGGGAAACAACGAGGCAATGGAGGGAATATCAGGGAGATCAGGATCAGAAGAAGAATCGCGTGAAGGCTCACAACAAGACATGTATCCGACCACGCCTCCTCCACCTGCTTCAACCGCACGAAGAAGAAAAGGCATTCCTCACAGGGCTCCATTTGCCTCCTAG 708 0.4972 MLLYCIHLAVRHIENQLRCSVTLIRQSLPKTNQRHNTMSVPQWLEPLLTTSFFSVCRFHGDAARSECNMFCLDCNRDAFCYYCRSSRHKDHQVIQIRRSSYHDVVRVSEIQKVLDISGVQTYVINSARVLFLNERPQPKSGKGVAHICEICGRSLLDPFRFCSLGCKLVGVKRNGDANFALEGNNEAMEGISGRSGSEEESREGSQQDMYPTTPPPPASTARRRKGIPHRAPFAS 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1005 235 Gene3D Classic Zinc Finger 52 115 - -
Lele06g1005 235 MobiDBLite consensus disorder prediction 188 235 - -
Lele06g1005 235 Pfam PLATZ transcription factor 97 168 IPR006734 -
Lele06g1005 235 SUPERFAMILY B-box zinc-binding domain 54 98 - -
Lele06g1005 235 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 36 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1005 Lele-ChrLele06 6233712 6235953 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Lele06g1005 PLATZ 1.3e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1005 06 6233712 6235953 Lele13g1716 13 25685071 25689694 CCT
Lele06g1005 06 6233712 6235953 Lele14g1661 14 24081153 24084174 CCT
Lele06g1005 06 6233712 6235953 Lele15g0700 15 4034432 4036879 CCT
Lele06g1005 06 6233712 6235953 Lele16g0703 16 3958582 3962781 CCT
Lele06g1005 06 6233712 6235953 Lele06g1005 06 6233712 6235953 ECH
Lele06g1005 06 6233712 6235953 Lele08g0990 08 6287745 6289918 hybridization