Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1001 ATGATGGTGTCGGCTATGTGGAATAGAGGTGGAGTCGTGGATTGGGGAGGACGATTCGATGCGTGGGTGACGACTGAAGGGGTGAATGGAGCCGGCTCTGTGTCGTCTATATACCGTCTCTGCTCTGTCCGTCTACTCTTGTCGCTTAACGTTGATGAATTAACAATCGACGAGAAAAAGAAGAGTCCTAAGGGTGATAGGGTGTGGACTTACTCTACTGATGACTTAGAGTTGAAATTTGATGTAGACAACTTGTTTTGTTCTTGGATGCTGAGCCGTGTTGATCCTTCGATGCAAGCCCCTCAGGCCCTTTGCATTTGTCCAACAAGAGAATTGGCTATTCAGGATGGTTTTAAAGATGGTTCCTTGAGAATAATGAAGGAAATAGAAAATGTCAATCTTCATTCTCAGGTTCTTCTTTTTTCAGCTACCTTCAATGACACTGTCAAGAATTTTGTTTCAAGGGTGAACTGTCCTGATGAGCTCTCTAAGATTGATGTGATCAGAGATTATATATTTGAGATAGGAGAGAATGTCGGGCAAACTATTGTATTTGTGCGCACAAGAAACAGTGCAAGTATGTTTCATAAATCACTTGCTGATGTGGGTTATGATGTTACTTCCGTACATGGTGCTCTTGACAATATTGAGAGAGACAGGATTGTTAAGGAGTTCAGGAATGGTTTGACTCAAGTTCTTATATCTACTGATGTTCTTGCTCGAGGTTTTGATCAGCAACAGGTGAATTTGGTTATCAATTACGATCTCCCTGTGAAACATACTGCTCAGTGTACCCGTGAGCCAGAACCTGATTATGAAGTATATTTGCACAGGGTCGGTAGGGCAGGACGTTTTGGGCGCGGGGGTAAGCTTCTAGTTCATGACATTCTAAAGAACTTTCTGTTTGAACAAACTAAACTGATATTGGGCAATGCATATATACAAGAACTTCCAACATTATCATCCCCCAAAATAGCCTCCAAGTCTTGTGGTGTGGCTGATCCATGTAGTGCAAGGCCAAAACATACAGTCTTGCAGGGAATATATGGATTCTGCTTATTCCACTCCCTCCTCAAAATCCTCTCTTGA 1089 0.4242 MMVSAMWNRGGVVDWGGRFDAWVTTEGVNGAGSVSSIYRLCSVRLLLSLNVDELTIDEKKKSPKGDRVWTYSTDDLELKFDVDNLFCSWMLSRVDPSMQAPQALCICPTRELAIQDGFKDGSLRIMKEIENVNLHSQVLLFSATFNDTVKNFVSRVNCPDELSKIDVIRDYIFEIGENVGQTIVFVRTRNSASMFHKSLADVGYDVTSVHGALDNIERDRIVKEFRNGLTQVLISTDVLARGFDQQQVNLVINYDLPVKHTAQCTREPEPDYEVYLHRVGRAGRFGRGGKLLVHDILKNFLFEQTKLILGNAYIQELPTLSSPKIASKSCGVADPCSARPKHTVLQGIYGFCLFHSLLKILS 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1001 362 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 116 292 - -
Lele06g1001 362 SMART helicmild6 193 286 IPR001650 -
Lele06g1001 362 Pfam Helicase conserved C-terminal domain 165 286 IPR001650 -
Lele06g1001 362 CDD SF2_C_DEAD 160 277 - -
Lele06g1001 362 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 167 325 IPR001650 -
Lele06g1001 362 Gene3D - 146 305 IPR027417 -
Lele06g1001 362 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 292 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1001 Lele-ChrLele06 6210396 6215388 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1001 108 319 Eukaryotic Initiation Factors Gene Family AT1G72730 32.110 4.98e-25 103