Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g1000 ATGCAGAGTTTTCTTTTGATGTTACTGGCCTTCGCCACCGTTTTGGTGCCGGTATCGGTAGTTCACGGTGGGTTGTACCCTCTGGAACGGGCAATTCCTCTCAGTCGGCAAGTAGAGCTGGAAGCACTCAGAGCTCGCGACCGAGCTCGGCACGTTCGAATCTTGCAAGGTGTAGCAGGTGGTGTTGTTGAATTCTCAGTCAAAGGGCTATCTGATCCTTCTACTATTGGGTTGTATTATACAAAAGTGAAGCTGGGCTCTCCTCCAAGAGAATTCAATGTCCAGATTGATACCGGAAGCGACGTATTGTGGGTTAATTGCAATACTTGCGGTAATTGCCCTCAATCTAGTGAATTGGAGATTCAGCTCAACTTCTTTGATACAGCCAGCTCATCCACATCTGCGCTGATTTCCTGCTCAGACCCAATATGCACTTCTTCAACTCAAAGTGCCGCAACTGAATGCACCCCTCAGATTAATCAGTGCAGCTACACCTTTCAGTATGGAGATGGAAGTGGGACATCAGGGTATTATGTTTCTGATGCAATGTATTTTGACATGATCCTTGGGCAGTCTATGCTGGCTAATTCTTCAGCTAAAGTTGTTTTTGGGTGTAGTACCTATCAGTCTGGAGATTTGACTAAGTCAGATAAGGCAGTGGATGGAATTTTTGGGTTTGGCCCTGGTGCTCTATCCGTTATTTCACAATTATCATCACGAGGCATCACCCCCAAAGTATTTTCTCATTGTTTAAAAGGAGATGGTAATGGAGGAGGCATACTAGTTCTTGGTGAGATTTTGGAGCCAAGTCTTGTTTATAGTCCACTTGTCCCGGCACAGCCTCATTACAACTTAAATCTTCAGAGCATTGGTGTTAATGGACGAATTCTCCCTATTAATCCTGCAGTTTTTGCAACATCTAACAACCGAGGAACTATTGTTGATACGGGTACAACCTTGTCATACCTTGTTCAAGAAGCATATGATCCGTTGGTCAATGCTATAACTACCATTGTTTCACAGTCTGCCACTCCCGTCATTTCAAAAGGAAGCCAGTGTTATTTGGCCTCAGCCAGTGTAGGTGATATATTTCCTTCAGTCAGTTTGATCTTTGCTGGTGGAGCATCCATGGTTTTAGAACCAGAACAGTACCTCTTACATTCTGATTTCATTGCAAGTGTCTTGGTTTCTCTGTTTGATCACATCTTGCATCTTTCCTTACTTATGGATAAGAGATTCTTCTCAAATGTGGTCCATCTTGTCCTAAAAGATAAGATATTTGTCTACGACTTAGCTCATCAACGAATTGGATGGGCTAACTATGACTGTTCTCTGTCTGTGAATGTCTCTGTGACCACAACCAAGGACGAGTATGTTAGCGCGGGACAGCTGAGTGTGAGCAGTTCAGAGTCAGGCATTCTCGCCAAGTTATCATCGGCTATCCCATCTGATGATGTGGTGTGGAAATTAAGATGTTTTGGTTCTGTATTTATTCTGCAAATGGGGAATCTTGTATCCATCTTACCAAAATTAGGATCTCACTGTAAAGGAACTCTGTTGAGAACTGCCAGAATTGTATATTATCTTCGCGGATGTAGTTGTACTATAATACTAAGCGTATATACAACAGTATGA 1635 0.43 MQSFLLMLLAFATVLVPVSVVHGGLYPLERAIPLSRQVELEALRARDRARHVRILQGVAGGVVEFSVKGLSDPSTIGLYYTKVKLGSPPREFNVQIDTGSDVLWVNCNTCGNCPQSSELEIQLNFFDTASSSTSALISCSDPICTSSTQSAATECTPQINQCSYTFQYGDGSGTSGYYVSDAMYFDMILGQSMLANSSAKVVFGCSTYQSGDLTKSDKAVDGIFGFGPGALSVISQLSSRGITPKVFSHCLKGDGNGGGILVLGEILEPSLVYSPLVPAQPHYNLNLQSIGVNGRILPINPAVFATSNNRGTIVDTGTTLSYLVQEAYDPLVNAITTIVSQSATPVISKGSQCYLASASVGDIFPSVSLIFAGGASMVLEPEQYLLHSDFIASVLVSLFDHILHLSLLMDKRFFSNVVHLVLKDKIFVYDLAHQRIGWANYDCSLSVNVSVTTTKDEYVSAGQLSVSSSESGILAKLSSAIPSDDVVWKLRCFGSVFILQMGNLVSILPKLGSHCKGTLLRTARIVYYLRGCSCTIILSVYTTV 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g1000 544 FunFam Aspartic proteinase-like protein 2 266 450 - -
Lele06g1000 544 Pfam Xylanase inhibitor N-terminal 79 264 IPR032861 -
Lele06g1000 544 PANTHER ASPARTYL PROTEASES 7 437 IPR001461 GO:0004190|GO:0006508
Lele06g1000 544 ProSiteProfiles Peptidase family A1 domain profile. 79 439 IPR033121 -
Lele06g1000 544 SUPERFAMILY Acid proteases 77 446 IPR021109 -
Lele06g1000 544 Gene3D Acid Proteases 266 450 IPR021109 -
Lele06g1000 544 PRINTS Pepsin (A1) aspartic protease family signature 312 323 IPR001461 GO:0004190|GO:0006508
Lele06g1000 544 PRINTS Pepsin (A1) aspartic protease family signature 85 105 IPR001461 GO:0004190|GO:0006508
Lele06g1000 544 FunFam Aspartic proteinase-like protein 2 62 265 - -
Lele06g1000 544 CDD pepsin_A_like_plant 79 443 IPR034161 -
Lele06g1000 544 Pfam Xylanase inhibitor C-terminal 282 439 IPR032799 -
Lele06g1000 544 Gene3D Acid Proteases 64 265 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g1000 Lele-ChrLele06 6203040 6207861 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g1000 76 444 Miscellaneous Gene Families AT1G44130 27.792 1.50e-38 144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1000 06 6203040 6207861 Lele13g1713 13 25655055 25659144 CCT
Lele06g1000 06 6203040 6207861 Lele14g1656 14 24060404 24061157 CCT
Lele06g1000 06 6203040 6207861 Lele15g0703 15 4046444 4063908 CCT
Lele06g1000 06 6203040 6207861 Lele16g0706 16 3978064 3982239 CCT
Lele06g1000 06 6203040 6207861 Lele06g1000 06 6203040 6207861 ECH
Lele06g1000 06 6203040 6207861 Lele07g1180 07 7125059 7129507 hybridization
Lele06g1000 06 6203040 6207861 Lele08g0987 08 6263255 6267838 hybridization