Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0999 ATGGCGAATACTACGTCGGTCGCCTCGACCGCTGCTTCGCTTTACGTCGGCGACCTCCACCCTGACATCACCGATGGTAAGCTGTTTGAAATATTCTCCGAGTTCAAGAGCCTCACTTCTGTTCGGGTCTGTAGGGACTCCTCTACCGGCAGGTCGCTATGTTACGGCTACGTCAACTTCGTCTCTCCTCAAGATGCAATTCGTGCTATTGAGGTGAAGAATCATTCTATACTGAATGGAAAAGCGATAAGGATCATGTGGTCAAATCGTGATCCTGATGCAACTAAAAGTGGAATAGGGAATGTATTTGTTAAGAAAGTGTTTCTCGTACCATGGCAGAATCTACCTGAAACAATAGATAACGTGGGATTACAAGATTTGTTTCAAAAGTTTGGTATCATTTTGTCCTGCAAAGTTGTCATGTCTGACAATGGAAAATGCAAAGGATATGGCTATGTTCAATTTCAGTCAGAGGAATCTGCAAATTCTGCCATCGAGAAGCTGAATGGCTCTACTGTTAACGACAAGCAAATCTATGTTGGAAAGTTTGTCAAAAAAAGTGACCGCATTTTGCCAAATCCTGATGCGAAATATACAAATTTGTACTTCAAGAATTTGGACCCGAAAATTACTGAAGAGCTTCTACAGGAAAAGTTCTCATCTTTTGGGAAAATTGTTAGCTTAGTTATTGCGAAGGATAACAATGGGATTTCAAAGGGTTTTGGCTTCGTGAACTATGATAACCCAGATGATGCTAGACGGGCAATGGAAGGAATGAATGGATCACAACTTGGTTCAAAAATTCTATACGTAGCCAGAGCACAAAAGAAGGCCGAGCGTGAGCTTATTTTGCACCATCAGTTTGAGGAGAAACGCAAGGAACAAATCTTAAAATACAAGGTATCAAATGTTTATGTGAAGAACATTGATGACGACGTAAGTGATGAAGAACTACGGAATCTTTTTCGTGCATGTGGCTCAATAACATCTGCAGTAGTTATGCGAGATGGCAAAGGTATAAGCAAAGGGTTTGGCTTTGTCTGCTTCTCCACCGCTGAGGAGGCTAATAAAGCTGTGAACACCTTTCATGGATACATGTTTCATCGCAAACCATTATATGTTGCTATTGCTCAAAGGAAGGAGGATAGGCAAGCACAATTGCAGATTCAGCATGCACAGCGAATAGCAGGACTATCTGGACCTTCAATAGCTGTTATTCCTGGCGGATATTCTCCTTATTATTATGCAGCTACCGGAGCCGTTTCACAGGTTCCTTCTCGACCTGGGCTAATGTGTCAACCTTTGGGGTTGACACAAGGATGGAGGGCTAACAGCTTTGTACCTCCTGCCAGACCATTTCAACAGCCACTTGTTCCTATGGTTTCCAGTTCTACAAGGCAAAATAGGCAAAACAGGGGCAGGATGAATGGGCAAACAATTTCACAAGGAAATCTTCACTCTGCTCCAAATATGCTACAATTGCGTCAGCCTTTTCAGTCAGTGAACTCTTCAAAAGAATTAAGTACACAACAGCGAGCTGGGCCGACAAAGTACGTGCCCAGTGGGTGCCAGCCTGAAATGGAGAAAGTATCTGGAGTCTCCTCTGGTGGTAGCTCTTCTGTAGGATCTTCGGGATCAGAAATGCTGCATAGCATGCTTGCTGCTGCTACTCTAGAGCAGCAGAAACAGATACTCGGCGAGCATCTGTACCCTCTAATCCATAAACTCAAGCCTGGCCTAGCAGCGAAGATTACAGGGATGCTTTTGGAGATGGACAATGGAGAATTGCTGCTTCTCCTGGAGTCTCCAGAGTCTCTTACTGCCAAGGTGGAAGAAGCCGTGCAGGTGCTCAAGAACTCCAAGACCAAAGTTTCTGGTCAGGATGTACTTCATCCTATTTTCCTTTCAGCTGAAGTTGCGGTGAACTAA 1929 0.4396 MANTTSVASTAASLYVGDLHPDITDGKLFEIFSEFKSLTSVRVCRDSSTGRSLCYGYVNFVSPQDAIRAIEVKNHSILNGKAIRIMWSNRDPDATKSGIGNVFVKKVFLVPWQNLPETIDNVGLQDLFQKFGIILSCKVVMSDNGKCKGYGYVQFQSEESANSAIEKLNGSTVNDKQIYVGKFVKKSDRILPNPDAKYTNLYFKNLDPKITEELLQEKFSSFGKIVSLVIAKDNNGISKGFGFVNYDNPDDARRAMEGMNGSQLGSKILYVARAQKKAERELILHHQFEEKRKEQILKYKVSNVYVKNIDDDVSDEELRNLFRACGSITSAVVMRDGKGISKGFGFVCFSTAEEANKAVNTFHGYMFHRKPLYVAIAQRKEDRQAQLQIQHAQRIAGLSGPSIAVIPGGYSPYYYAATGAVSQVPSRPGLMCQPLGLTQGWRANSFVPPARPFQQPLVPMVSSSTRQNRQNRGRMNGQTISQGNLHSAPNMLQLRQPFQSVNSSKELSTQQRAGPTKYVPSGCQPEMEKVSGVSSGGSSSVGSSGSEMLHSMLAAATLEQQKQILGEHLYPLIHKLKPGLAAKITGMLLEMDNGELLLLLESPESLTAKVEEAVQVLKNSKTKVSGQDVLHPIFLSAEVAVN 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0999 642 SMART poly_2 557 620 IPR002004 GO:0003723
Lele06g0999 642 Gene3D - 190 283 IPR012677 -
Lele06g0999 642 Gene3D - 284 392 IPR012677 -
Lele06g0999 642 CDD RRM4_I_PABPs 302 379 - -
Lele06g0999 642 CDD RRM1_I_PABPs 13 92 - -
Lele06g0999 642 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 302 379 IPR000504 GO:0003723
Lele06g0999 642 Gene3D - 112 189 IPR012677 -
Lele06g0999 642 FunFam Polyadenylate-binding protein 543 629 - -
Lele06g0999 642 FunFam Polyadenylate-binding protein 4 95 - -
Lele06g0999 642 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 84 IPR000504 GO:0003723
Lele06g0999 642 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 268 IPR000504 GO:0003723
Lele06g0999 642 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 304 372 IPR000504 GO:0003723
Lele06g0999 642 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 178 IPR000504 GO:0003723
Lele06g0999 642 FunFam Poly(A) binding protein cytoplasmic 1 like 96 189 - -
Lele06g0999 642 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 276 IPR000504 GO:0003723
Lele06g0999 642 SUPERFAMILY RNA-binding domain, RBD 299 393 IPR035979 GO:0003676
Lele06g0999 642 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 12 618 IPR006515 GO:0003723
Lele06g0999 642 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Lele06g0999 642 SUPERFAMILY RNA-binding domain, RBD 114 189 IPR035979 GO:0003676
Lele06g0999 642 MobiDBLite consensus disorder prediction 505 544 - -
Lele06g0999 642 Pfam Poly-adenylate binding protein, unique domain 552 617 IPR002004 GO:0003723
Lele06g0999 642 FunFam Polyadenylate-binding protein 190 284 - -
Lele06g0999 642 Gene3D - 543 631 - -
Lele06g0999 642 SUPERFAMILY RNA-binding domain, RBD 13 279 IPR035979 GO:0003676
Lele06g0999 642 CDD RRM2_I_PABPs 98 182 IPR045305 -
Lele06g0999 642 FunFam Polyadenylate-binding protein 285 393 - -
Lele06g0999 642 SUPERFAMILY PABC (PABP) domain 489 628 IPR036053 GO:0003723
Lele06g0999 642 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 185 IPR000504 GO:0003723
Lele06g0999 642 SMART rrm2_1 109 181 IPR003954 GO:0003676
Lele06g0999 642 SMART rrm2_1 200 272 IPR003954 GO:0003676
Lele06g0999 642 SMART rrm2_1 303 375 IPR003954 GO:0003676
Lele06g0999 642 SMART rrm1_1 101 181 IPR000504 GO:0003723
Lele06g0999 642 SMART rrm1_1 303 375 IPR000504 GO:0003723
Lele06g0999 642 SMART rrm1_1 13 86 IPR000504 GO:0003723
Lele06g0999 642 SMART rrm1_1 200 272 IPR000504 GO:0003723
Lele06g0999 642 PANTHER RNA BINDING PROTEIN 298 510 - -
Lele06g0999 642 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 545 622 IPR002004 GO:0003723
Lele06g0999 642 Gene3D - 2 98 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0999 Lele-ChrLele06 6196303 6200740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g0999 12 640 Eukaryotic Initiation Factors Gene Family AT2G36660 51.420 0.0 607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1702 13 25604335 25607278 Lele06g0999 06 6196303 6200740 CCT
Lele14g1644 14 24003211 24006751 Lele06g0999 06 6196303 6200740 CCT
Lele15g0711 15 4101334 4111153 Lele06g0999 06 6196303 6200740 CCT
Lele16g0717 16 4043677 4046406 Lele06g0999 06 6196303 6200740 CCT
Lele06g0999 06 6196303 6200740 Lele06g0999 06 6196303 6200740 ECH
Lele06g0999 06 6196303 6200740 Lele07g1179 07 7117232 7121712 hybridization
Lele06g0999 06 6196303 6200740 Lele08g0986 08 6256681 6261159 hybridization