LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele06g0971	ATGGATAGCTCGCGTAGACCGTTTGATAGATCGAGAGAGCTGGGTATCAAGAAACCCCGACTGACCGACGAGCTTGAGCGTGGCTCAAATTCCAGTCTTCGACCTTTTCCTCAGCGACAAGAGGCTTCTGGAGTTAATTCATTGGCCCCGGCAAGGTTTAGGACAAATGACAGAGATTCCGAAGGCAGTGACCCTGGTCGCGGTGGATACCAGCCCCAATCGCTCCACCAAGAGATTGTCAATCAGTACAAAACCGCACTTGCTGAGCTGACATTCAATTCTAAACCGATAATTACCAACTTGACCATAATTGCAGGCGAGAATCTTTTTGCCTCGAAGGCAATTGCTGCCGCTGTGTGTGCTAACATTCTAGAGGTTCCCACCGAACAAAAGCTGCCATCTCTTTATCTTTTAGACAGTATTGTTAAGAATATTGGGCGGGACTATATAAAATACTTTGCTGCTAGACTACCTGAGGTACTTGCCAATTACTCCTTTACATTTTAG	507	0.4635	MDSSRRPFDRSRELGIKKPRLTDELERGSNSSLRPFPQRQEASGVNSLAPARFRTNDRDSEGSDPGRGGYQPQSLHQEIVNQYKTALAELTFNSKPIITNLTIIAGENLFASKAIAAAVCANILEVPTEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVLANYSFTF	168

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele06g0971	168	Pfam	CID domain	84	163	IPR006569	-
	Lele06g0971	168	SMART	558neu5	78	167	IPR006569	-
	Lele06g0971	168	MobiDBLite	consensus disorder prediction	1	27	-	-
	Lele06g0971	168	MobiDBLite	consensus disorder prediction	1	75	-	-
	Lele06g0971	168	SUPERFAMILY	ENTH/VHS domain	76	164	IPR008942	-
	Lele06g0971	168	CDD	CID_Pcf11	80	160	-	-
	Lele06g0971	168	Gene3D	-	70	166	IPR008942	-
	Lele06g0971	168	MobiDBLite	consensus disorder prediction	28	45	-	-
	Lele06g0971	168	ProSiteProfiles	CID domain profile.	75	168	IPR006569	-
	Lele06g0971	168	PANTHER	PRE-MRNA CLEAVAGE COMPLEX II	46	160	IPR045154	GO:0000993\|GO:0003729\|GO:0006369\|GO:0006378\|GO:0006379

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele06g0971	Lele-ChrLele06	6003845	6006671	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele06g0971	78	162	C2H2 Transcription Factor Family	AT4G04885	69.412	3.18e-34	125

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele13g1683	13	25466331	25468553	Lele06g0971	06	6003845	6006671	CCT
	Lele14g1622	14	23849259	23849636	Lele06g0971	06	6003845	6006671	CCT
	Lele15g0736	15	4260664	4262545	Lele06g0971	06	6003845	6006671	CCT
	Lele16g0742	16	4202395	4204115	Lele06g0971	06	6003845	6006671	CCT
	Lele06g0971	06	6003845	6006671	Lele06g0971	06	6003845	6006671	ECH
	Lele06g0971	06	6003845	6006671	Lele07g1146	07	6921943	6929312	hybridization
	Lele06g0971	06	6003845	6006671	Lele08g0958	08	6049236	6056435	hybridization