LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele06g0970	ATGATTGAGAAGGAACTTGGCTTCACTCCTGCTGTCAATGGTTCTTCTGCATCTACACTGAGGAGTGATTCACAGTCACAACGACCACAGCATGGTATCCATGTGAATCCTAAATATTTGGAGAGGCAGCGTCTTCAGCAATCTGGCAGGATTAAAGGAACAGCTAATGATATTGCTGGAACTACTGCAAACTCTAGTGATGGCTCGGAAAGGCCAGATAGAGCATTAGGTGCTGCACAACCATGGGTGGAGTCAAGTGCTAACATGCATAATATTCAGGGCTCTAATAGAGATTCATATAATGATTCTGTTCCTGAAAAGGGCATTGGGGCATCCTATGAAGGCAATGAATATGGTTCTGATCTTTCAAGGAATTCAAGTTTGGGTATTGGAAGAGCTGGTGTCAGGACCTCTGAGTTGGCCCATGATAAAGCATGGTACAAAGCAGGCAGTAATGCTGCAGGCATCATGTCTGTCCAAAGGAATGGTTTCAGTCTCAAGCGTAGCTTACCAAATCATGAAGCACCAAAGTCCATCAACTTGGATGAACATAATCAGTCAACACAGAGCTTAACTAGCATTAAGAGTAGTGTCTTGTCATGTAGCTGGAAAAATTCTGAGGAAGAGGAGTACATGTGGGATGAGGTGAATGCTGGACTGACTGAGCATGGTGCATCCAATGCCTCTAACAACTTGAGCAAAGATTGTTGGACTGCTGATGATGACCATTTGGCAGTTGAAGCTCACCTTCAAAGCACGTTCCATGAAGATAGGGATGTATCCACTGAAATGAAACGCTCACCTGCTTTTGGTCATCGGCCATCCTTATCTTGGAAATCACAGCAGCAGCAGTCATTTGATGAGCTGAATCATAGGCCATGTCCTTCAGAAGGCATTGGATCCACTCTTGGTAGGTTGCCAAACGTTGTGAATTCTTCTAATGTCCAAATGGGGAATCGGCCTTTCTTGTCAAATGCCACATCAGGATCGGTAGGAACAGTGCAACAACAGCAATTTCATTCTGTGGGAGCAGACTCTCCATCTTGGCAGTCACCTTTGCGACAACAGTCTCCATCACCATCAGTTAATGCGCACCATCCTCATCAAATGCAGATTTTGGCTGAGCAAGACCATCAACAGACTCTTAAAAAGTCTCAATTTTCTGGACGTCTACAGAGCCAAGATATTCAAGATTCATCATCTGTCCTTCCACATACTGTTCATGTTGGTAACTCACAGAGTTCACATCAAAAGGACTTGCTAGGCCCATTGTCTTCAGTATCTACTTTTCAGCCAAGTCGCCATAATGCAGCTTCGCAACCGCAGCATCTTGGTTCTAACACTCAAGTGTTTGAGATGAAGGAAAAGATGACCCACCCTAAAGAAACATCAGAGCAGTCAACTACAAGTACTATGTTAGCTGCAGTTATGAAGAGTGGAATTTTCACCAGCGGTGAGCCTGATACAAGTTTCTCGGATAGAAGGAACCTTCCATTGAAATCAGGGGTTCGGCCTACCCGACCAAGTGGATCATCTCCTACAACATCAGTTTCTTCAGGGTCTGGGGTTGCATCTCCATCTCGATTAGGTCCTTCTAACGATGACTCATCTATTCTGCCAAAAGAATCTCAAGGAAAGGTTGGAGGCCCGTCAAGGCTACCTGCTCCACCACCAGCTTCCGCTACTGCAAGTAGTGCCTCAGCCAAGACGTCAAATGCCACCAACAATAAATCTAATCCAGTTTCAAACCTTTTAAACTCATTAGTTGCGAAGGGTTTGATTTCTGCAAAAATAGATTCATCTACTGAGGTGCCAGTTGAGGTGCTGACTCAATTGGAAGATCAGAGCCAAAGCATCACCGCCAGTAGTGCTTTGCCAGCTGTTTCAGTTACTGGTTCTGAAACTGTTCCTGTTTTATCTACCGGAGATGATCAGCCTGCAAACAGTTCGTCTAGTCAATCAAACCCCACAGAAATAAAAAGTTTAATTGGCTTTGAGTTTAAGCCCAGTGTGATCCGAGAATTGCATATACCTGTGATCAGAGAACTATTGGATAATTTCCCTCATCATTGCAGTATTTGTGGCCTTAGGCTTAAACATCAAGAACAATTTAATAGACACTTGGAGTGGCATGCTACGATAGGAAGAGAACAAAATGATATATTGAAGGCCTCAAGGAGATGGTATTTAAGGTCAAGTGACTGGGTTGCTGGCAAGGATGAAGTTTCAGCTGATCGTGAGGGTATTGATTCCATAGATTTACATGGCAATAAATCAGACAGAAGTGAAGAGGATGCTAAGGTTCCATCTGATGAAGATCAGTGCTTATGTATGCGGTGTGGTGAGCTGTTTGAAGATGTTTATTGTCAAGAAAGGGATGAGTGGATGTTCAAAGGGGCAGTTTACCTACCTGTCTCTAGTAGTGATAGTGAGATGTATATTGTCAGTAGTAAAAGGGGCCCCATTGTTCACACTTGGTGCTTATCAGAGAGCTCCATGTCTAGCGCCCCTAGAAAGGAACAGGAACAGGATTAG	2535	0.4398	MIEKELGFTPAVNGSSASTLRSDSQSQRPQHGIHVNPKYLERQRLQQSGRIKGTANDIAGTTANSSDGSERPDRALGAAQPWVESSANMHNIQGSNRDSYNDSVPEKGIGASYEGNEYGSDLSRNSSLGIGRAGVRTSELAHDKAWYKAGSNAAGIMSVQRNGFSLKRSLPNHEAPKSINLDEHNQSTQSLTSIKSSVLSCSWKNSEEEEYMWDEVNAGLTEHGASNASNNLSKDCWTADDDHLAVEAHLQSTFHEDRDVSTEMKRSPAFGHRPSLSWKSQQQQSFDELNHRPCPSEGIGSTLGRLPNVVNSSNVQMGNRPFLSNATSGSVGTVQQQQFHSVGADSPSWQSPLRQQSPSPSVNAHHPHQMQILAEQDHQQTLKKSQFSGRLQSQDIQDSSSVLPHTVHVGNSQSSHQKDLLGPLSSVSTFQPSRHNAASQPQHLGSNTQVFEMKEKMTHPKETSEQSTTSTMLAAVMKSGIFTSGEPDTSFSDRRNLPLKSGVRPTRPSGSSPTTSVSSGSGVASPSRLGPSNDDSSILPKESQGKVGGPSRLPAPPPASATASSASAKTSNATNNKSNPVSNLLNSLVAKGLISAKIDSSTEVPVEVLTQLEDQSQSITASSALPAVSVTGSETVPVLSTGDDQPANSSSSQSNPTEIKSLIGFEFKPSVIRELHIPVIRELLDNFPHHCSICGLRLKHQEQFNRHLEWHATIGREQNDILKASRRWYLRSSDWVAGKDEVSADREGIDSIDLHGNKSDRSEEDAKVPSDEDQCLCMRCGELFEDVYCQERDEWMFKGAVYLPVSSSDSEMYIVSSKRGPIVHTWCLSESSMSSAPRKEQEQD	844

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele06g0970	844	MobiDBLite	consensus disorder prediction	635	656	-	-
	Lele06g0970	844	MobiDBLite	consensus disorder prediction	385	445	-	-
	Lele06g0970	844	MobiDBLite	consensus disorder prediction	90	112	-	-
	Lele06g0970	844	MobiDBLite	consensus disorder prediction	505	540	-	-
	Lele06g0970	844	MobiDBLite	consensus disorder prediction	274	290	-	-
	Lele06g0970	844	ProSitePatterns	Zinc finger C2H2 type domain signature.	691	711	IPR013087	-
	Lele06g0970	844	MobiDBLite	consensus disorder prediction	482	496	-	-
	Lele06g0970	844	MobiDBLite	consensus disorder prediction	558	582	-	-
	Lele06g0970	844	MobiDBLite	consensus disorder prediction	482	582	-	-
	Lele06g0970	844	MobiDBLite	consensus disorder prediction	41	69	-	-
	Lele06g0970	844	MobiDBLite	consensus disorder prediction	1	78	-	-
	Lele06g0970	844	PANTHER	PRE-MRNA CLEAVAGE COMPLEX II	1	838	IPR045154	GO:0000993\|GO:0003729\|GO:0006369\|GO:0006378\|GO:0006379
	Lele06g0970	844	MobiDBLite	consensus disorder prediction	305	366	-	-
	Lele06g0970	844	MobiDBLite	consensus disorder prediction	11	32	-	-
	Lele06g0970	844	MobiDBLite	consensus disorder prediction	265	367	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele06g0970	Lele-ChrLele06	5999486	6003742	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele06g0970	621	832	C2H2 Transcription Factor Family	AT4G04885	33.333	1.51e-30	127

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Lele06g0970		None	None	None