Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0965 ATGCGTTCCAATACTCACTCTAGTTCTACCAGCGCTCCCACCGGAGCTAGCAGCAGCAGCGGTGCAGCGACCGGGCGTCACCCGGTGTACCGGGGGGTGAGGCGTCGGAGTAGCGGGAAATGGGTGTCTGAAATTCGAGAGCCCAGGAAGCCCAATAGGATATGGTTAGGGACATTCCCTACCCCTGAAATGGCTGCCATTGCCTATGACGTGGCCGCCCTCGCCCTCAAAGGCAGGGAGGCCGACCTTAACTTCCCTGACTCAGCTTCTTCGCTGCCCGTTCCGGCGTCTCGGTCTGCCCGTGATATTCAGATTGCTGCAGCCAGCGCTGCTGCTGCTGCTGGGGCAGCCAGGGATGCCTTACCCGGGCCCAATGAACAAGCGAGTGCTAATGCTAGTGCTTCGGAGGGACAACAGTATGCGGGGGCTGAGTTTGTGGACGAGGATTTGATCTTTGATTTGCCTAATGTTCTTGTCAATATGGCTGAAGGAATGCTGCTAGCCCCTCCTCCTCTGGACTTTACTGGGACCAATGATGCTGATGATGACGATTCTGCCGGAGGGAACGTCGGTGGTGGTGATCAAAACCTTTGGAAATTTCCATAA 606 0.5644 MRSNTHSSSTSAPTGASSSSGAATGRHPVYRGVRRRSSGKWVSEIREPRKPNRIWLGTFPTPEMAAIAYDVAALALKGREADLNFPDSASSLPVPASRSARDIQIAAASAAAAAGAARDALPGPNEQASANASASEGQQYAGAEFVDEDLIFDLPNVLVNMAEGMLLAPPPLDFTGTNDADDDDSAGGNVGGGDQNLWKFP 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0965 201 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Lele06g0965 201 MobiDBLite consensus disorder prediction 1 24 - -
Lele06g0965 201 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 24 199 IPR045277 GO:0003700
Lele06g0965 201 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Lele06g0965 201 PRINTS Ethylene responsive element binding protein signature 68 88 IPR001471 GO:0003700|GO:0006355
Lele06g0965 201 FunFam Ethylene-responsive transcription factor 2 28 87 - -
Lele06g0965 201 CDD AP2 30 88 IPR001471 GO:0003700|GO:0006355
Lele06g0965 201 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Lele06g0965 201 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Lele06g0965 201 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Lele06g0965 201 MobiDBLite consensus disorder prediction 1 47 - -
Lele06g0965 201 MobiDBLite consensus disorder prediction 173 201 - -
Lele06g0965 201 SUPERFAMILY DNA-binding domain 29 88 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0965 Lele-ChrLele06 5960095 5960700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g0965 15 201 AP2-EREBP Transcription Factor Family AT2G36450 61.458 5.12e-59 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele06g0965 AP2 6e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0965 06 5960095 5960700 Lele06g0965 06 5960095 5960700 ECH
Lele06g0965 06 5960095 5960700 Lele07g1140 07 6879367 6879966 hybridization