Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0899 ATGGACTTAAGGACTAGGGTCCCCCACAGTCTCTTTTTGAATAAAGTGTTGGAGCTACCAAAATGGATATTTTGTGTTGCACGCGGCTATTACTTTATTCAAACCATATCTTCTTTCCGGTTTTGTTCATTTCCTTTGGTTGGACTTATTCCTCACACTGAGGCCCAGCCTGGCCGAACGACGTTTCTTCATGGTCAAGAACTCATGGTTCTTTTCTGGTTTTCTTCTGTACATGGGGTTCTATTTATTATTTGCCTGCTTGCCATTAAATGCACTCCATGTGTTAGTGTCGTTGCATATAGGGTCGACATGACGCAGAAGAGAGCAAATATACATGTGTATATACCTGGACCTGAGGATGACGCAATCACGGGGGGTGTTCATGAATGGAGACAGCAGCATCAACTACAAGGCATCGTCCTTATGGAACCAATCCACAACATCAACTCGTGCACGCGCTTTTTCAACCCTGAGGAAGAAGATGAGGACCAAAAGGAAACCATGTTCGAGAAGGCCTTAACGCCGAGCGACGTTGGGAAGCTGAACCGACTGGTGATCCCCAAGCAGCACGCGGAGAAGTACTTCCCACTCAGCGGTGGGGCCGCCGACGCCAAGGGCGTCTTGCTGAGTTTCGAGGATGAGTCCGGCAAGTGCTGGCGCTTCCGATACTCTTACTGGAACAGTAGCCAGAGTTACGTCTTGACCAAAGGCTGGAGCCGTTACGTCAAGGACAAGCACCTCGACGCCGGCGACGTTGTTTCCTTTCACCGTCACCTTACAGATTCTCACCGACTTTTCATCTCCTGGAGGCGCCGCAATCCTCATGCCAGTCCACCAGTTACCAGGCGTATGCATATGGCCGTCGCAAGCGATGCCACTTCCAGAGGTGGCCATGGGGGTGTAGGATGGACCTCCCCTACACCTTTCTGTTCTGGGCATACTTATCCCGAACATCAACTTTTGCCATATCAACCTCAAACTCTTCATGCACCAGCAAGAGGTTTCCCAGCTGAAAGGACGGCGGTGGGAAACAGTTCAAGTAAGGTGCTGAGACTATTCGGAGTGAACATGGAATGCCAAGCAGAAGAAGCAGATGAATCAGGAGCTTCGACATCGCAGCACTCCTCCAACTTCTCATCATCATCTACGCTTCATCATTTCTACCAATATGATTATCCTCGGCCTTCATATGCTTCCAGTCCTCAATGCCACATGGTACGTCAACAACCATACTTCTGA 1239 0.4948 MDLRTRVPHSLFLNKVLELPKWIFCVARGYYFIQTISSFRFCSFPLVGLIPHTEAQPGRTTFLHGQELMVLFWFSSVHGVLFIICLLAIKCTPCVSVVAYRVDMTQKRANIHVYIPGPEDDAITGGVHEWRQQHQLQGIVLMEPIHNINSCTRFFNPEEEDEDQKETMFEKALTPSDVGKLNRLVIPKQHAEKYFPLSGGAADAKGVLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKHLDAGDVVSFHRHLTDSHRLFISWRRRNPHASPPVTRRMHMAVASDATSRGGHGGVGWTSPTPFCSGHTYPEHQLLPYQPQTLHAPARGFPAERTAVGNSSSKVLRLFGVNMECQAEEADESGASTSQHSSNFSSSSTLHHFYQYDYPRPSYASSPQCHMVRQQPYF 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0899 412 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 158 372 IPR044800 GO:0003700
Lele06g0899 412 Gene3D - 158 279 IPR015300 -
Lele06g0899 412 ProSiteProfiles B3 DNA-binding domain profile. 169 273 IPR003340 GO:0003677
Lele06g0899 412 FunFam B3 domain-containing protein 162 281 - -
Lele06g0899 412 Pfam B3 DNA binding domain 169 273 IPR003340 GO:0003677
Lele06g0899 412 SUPERFAMILY DNA-binding pseudobarrel domain 165 273 IPR015300 -
Lele06g0899 412 CDD B3_DNA 168 263 IPR003340 GO:0003677
Lele06g0899 412 SMART B3_2 169 273 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0899 Lele-ChrLele06 5584799 5589669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g0899 162 365 RAV Transcription Factor Family AT5G06250 51.643 1.58e-63 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele06g0899 B3 3.6e-29 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0899 06 5584799 5589669 Lele06g0899 06 5584799 5589669 ECH
Lele06g0899 06 5584799 5589669 Lele07g1075 07 6491559 6496269 hybridization
Lele06g0899 06 5584799 5589669 Lele08g0888 08 5608229 5611550 hybridization