Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0867 ATGCTAGGTGGGGGGGATAGCGAAGAAAGAATCCATGCTCAGTATGAGTTTGATAAGAATGGAGATAACGAAACTTGGAAGATGCCTGGCACAAGAAAGGTTACAGTGTTGTGCCAAAAAGGGATGATGTTCTGTTCCGATTGGATTGACCAGGGAAGAGTAGAGAAGTCGCCTGTAATGGAAAGAGTCATGATGATGAGGATTGAAAAGGGAGACAAGTTTGAAGTGGGTGTTGTAGGGTCTCGTGAAATTAATGAGCAGAGGGTGTTGTTGCAAACAGACAACAACGTTGACTTGGAATTGCAGATCAATATAAGAAACAAAGATGAAGAATATTATTACCAGATCAGCCGGCTTTGTTGGCCGATCTTAGTTGAGATTCCTGAGTATTTCATTTGCCCCATATCCCTCCAAATCATGAAAGACCCCGTTACTGCCGTTACCGGTATCAGTTACGATCGGGAAAGCATCGAACGCTGGCTCTTCACCTCCAACAACACCACTTGCCCCGTCACCAAACAGACTGTGCCGTTAGACTCCGACTTGACCCCCAACCACACCCTTCGCCGTCTCATTCAAGCTTGGTGCACTCAGAATGCCTCCCTCGGCATCGATCGTATTCCCACCCCCAAACCTCCCCTCGACAAGTTTCAGGTCCTCAAAATCCTCTCCCACCTTCGCAGCCCTCACCTGTATCTCAAAGCTCTCCGCCAGTTAGAACTGCTCGCCGCCGAGAACCACCGGAATAAGAGGTGTTTGGTGGAGGCTGGTGTTCCCAGGGCCATGGTCTTGTTCGTTTTGGATTGTTTTCAGAAAAGATGGATTCGAGAGGGGCTCGAAGAGGCTCTCAGTTTGTTGCAGTTTGTTAAGGTTCCCCAAGGGGAAATCAGGCTGCTTCTGCAGCAAAATGATCAGGTTTTGGATTCTCTCACGTGGGTTTTAGCCTCTGAAATAATGAACAACTCTGTGACTCTCAAGTCCCACACGATTACGGTGCTCAAAACGATCATCCAGAAGGCCAGCTCCAGCGTCATGGAGAGACTCAAACCCGAGTTCTTTGAAACAGTTGTGAAAGTCCTACGAAATGGAATAACCCTGCAAGGGATGAACGCTGGTCTGAAAGTGCTGTTAGCAGCTTGTCCGTGGGGAAGAAATCGCCAGTTGATGGTGGAGGCCGGTGCAGTTCATGAGTTGATTGAGATTGAGCTGGGGACGCCCGAGAAGATAACGACGGAGCTAATATTAGGAATACAGTTTCATCTGTGTTCTTGCGCCAGTGGGAGAGCTGAGTTCGTGAGTCACAGAGGCGGCATTGCGGTGTTGACGGAGAGAATATTGAAGGTGTCGCCGGCGGCAGATGAAAGAGCCATATTTGTGCTGTCACAGGTATCAAAATCATGTGCTTCGCAAGCAGTAATCCAAGAGATGTTGCAGCTTGGGACATTGTCGAGGCTTTGCATGTTGGTTCAGGCCGATCATCCTTCATATCTAAAAGACAAAGCAATGGACATCCTCAAGTCCCATTCTGAGGTTTGGAAGAACTCGCCTTGCTTTCCTGGATCTTTTAAAGCAAGTTTGCACAGGTGA 1587 0.4827 MLGGGDSEERIHAQYEFDKNGDNETWKMPGTRKVTVLCQKGMMFCSDWIDQGRVEKSPVMERVMMMRIEKGDKFEVGVVGSREINEQRVLLQTDNNVDLELQINIRNKDEEYYYQISRLCWPILVEIPEYFICPISLQIMKDPVTAVTGISYDRESIERWLFTSNNTTCPVTKQTVPLDSDLTPNHTLRRLIQAWCTQNASLGIDRIPTPKPPLDKFQVLKILSHLRSPHLYLKALRQLELLAAENHRNKRCLVEAGVPRAMVLFVLDCFQKRWIREGLEEALSLLQFVKVPQGEIRLLLQQNDQVLDSLTWVLASEIMNNSVTLKSHTITVLKTIIQKASSSVMERLKPEFFETVVKVLRNGITLQGMNAGLKVLLAACPWGRNRQLMVEAGAVHELIEIELGTPEKITTELILGIQFHLCSCASGRAEFVSHRGGIAVLTERILKVSPAADERAIFVLSQVSKSCASQAVIQEMLQLGTLSRLCMLVQADHPSYLKDKAMDILKSHSEVWKNSPCFPGSFKASLHR 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0867 528 CDD RING-Ubox_PUB 131 174 IPR045210 -
Lele06g0867 528 ProSiteProfiles U-box domain profile. 126 202 IPR003613 GO:0004842|GO:0016567
Lele06g0867 528 SMART Ubox_2 130 195 IPR003613 GO:0004842|GO:0016567
Lele06g0867 528 SUPERFAMILY ARM repeat 220 495 IPR016024 -
Lele06g0867 528 Gene3D - 210 516 IPR011989 -
Lele06g0867 528 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 202 IPR013083 -
Lele06g0867 528 Pfam U-box domain 127 199 IPR003613 GO:0004842|GO:0016567
Lele06g0867 528 SUPERFAMILY RING/U-box 123 204 - -
Lele06g0867 528 PANTHER WDSAM1 PROTEIN 126 519 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0867 Lele-ChrLele06 5403669 5410557 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g0867 125 518 U-box Gene Family AT3G11840 42.369 1.21e-113 343