Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0864 ATGGACGACAATATTGAAGTTCCTACCTTCTTCCTGTGCCCCATCTCCTTAGAAATCATGAAAGATCCCATCACCGTCTCCTCCGGGATTACCTACGACAGAGAGAGCATCGAGAAATGGCTCTTCTCCGGCAAAAACAAGACCTGCCCAGTCACCAAACTACCTCTCTCCGTATCTGACTCCTCCGACCTCCTTCCCAACCACACCCTTCGTCGTTTGATTCAATCCTGGTGTACCCTCAACGCCTCTCAAGGCATCCAAAGGATCCCCACGCCAAAACCACCCGTCACCAAAACTCAGGTTGCCAAAATCATCAAAGACGCTTCTCGATCTTCTCTTTCCCCAGCTAAATGCCTCCAAACACTCAAATCCATTGCTTCCGAAAGCGACGCCAATAAACGTAGCATAGAAGCCGCCGGCGCCGTTGAATTCTTGGCATCCATTGTACTCCGTCACACAAATTTCTCCTACACACCCGAAGAGGCCAGCCCTGATGATGATGGGTTTGAATTGAAAACCAGCAGAGGCGACGAAGCCTTAAGCATCCTCCATAGCCTCCACCTGTCCGAGGCCGGCTTCAAGAGTCTCGTAACCTTCGAAAACGGATCATTCATTGCATGCTTAACCAGAATCATGCAGAGGGGATTCTACGAGTCACGAGCTTATGCGGTCTTGTTGTTAAAATCCATGTTTGAAGTGGCTGATCCGACGGTTTTATCCCATTTGAAACCTGAAATATTCGTTGAATTAGTTCAACTGTTGAAAGACCAGATATCTCAGCAAGCCTCGAAGGCGACTCTAAGAACACTCATCCAAATATGTCCATGGGGGAGAAACAGAATAAGAGCAGTGGAATCCGGAGGTGTATCGGTGCTGATAGAGCTTCTTCTAGACTGTAAGGACAGGAAGCCATGTGAGATGATGATGGTGTTGTTGGAGACGCTATGTGGATGTGCCGAGGGGAGAGCTGAGTTACTGAGTCATGGAGCAGGAATCGCAATAGTTTCGAAGAAGATTCTGAGGGTGTCGACGATGGCCAACGATAGGGCAGCGAGGATTCTGCTGTCCATTGCCAAGTTCTCTGCAACTCCAAGCGTATTGCAGGAAATGCTGAATGTCGGGGTAGTGGCGAAGCTGTGTTTGGTGCTTCAAGTGGAGAGTGGGCGAAAGGCTCAGGAGAAAGCCAGAGAGATTCTCAGAATGCATTCTCGGGCTTGGAGGAACTCTCCATGCGTACCCAGCAATTTGCTTTTTTCTTACCCGAATTGA 1269 0.4901 MDDNIEVPTFFLCPISLEIMKDPITVSSGITYDRESIEKWLFSGKNKTCPVTKLPLSVSDSSDLLPNHTLRRLIQSWCTLNASQGIQRIPTPKPPVTKTQVAKIIKDASRSSLSPAKCLQTLKSIASESDANKRSIEAAGAVEFLASIVLRHTNFSYTPEEASPDDDGFELKTSRGDEALSILHSLHLSEAGFKSLVTFENGSFIACLTRIMQRGFYESRAYAVLLLKSMFEVADPTVLSHLKPEIFVELVQLLKDQISQQASKATLRTLIQICPWGRNRIRAVESGGVSVLIELLLDCKDRKPCEMMMVLLETLCGCAEGRAELLSHGAGIAIVSKKILRVSTMANDRAARILLSIAKFSATPSVLQEMLNVGVVAKLCLVLQVESGRKAQEKAREILRMHSRAWRNSPCVPSNLLFSYPN 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0864 422 PANTHER WDSAM1 PROTEIN 5 413 IPR045185 GO:0061630
Lele06g0864 422 SUPERFAMILY RING/U-box 4 82 - -
Lele06g0864 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 89 IPR013083 -
Lele06g0864 422 Gene3D - 99 409 IPR011989 -
Lele06g0864 422 CDD RING-Ubox_PUB 11 53 IPR045210 -
Lele06g0864 422 FunFam RING-type E3 ubiquitin transferase 1 87 - -
Lele06g0864 422 SUPERFAMILY ARM repeat 118 408 IPR016024 -
Lele06g0864 422 Pfam U-box domain 7 79 IPR003613 GO:0004842|GO:0016567
Lele06g0864 422 ProSiteProfiles U-box domain profile. 6 84 IPR003613 GO:0004842|GO:0016567
Lele06g0864 422 SMART Ubox_2 10 77 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0864 Lele-ChrLele06 5375149 5376417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g0864 1 421 U-box Gene Family AT2G35930 55.765 4.15e-171 483