Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0859 ATGAACGACCTGTTCTCCGGCTCGTTCTCCCGCTTCCGCGGCGAGCAAGTCTCGCCGGATAACCAGCACCACGTCATCCAGATGACGGACACGTCGCCGTCGAGGGATGGAGTCAACCTCGACAAATTCTTCTCGGAAGTGGAGTCCGTCAAGGAGGAACTCAAGGAGCTGGAGAGGCTCAACCAGAGACTCCGTGAATCCCACGAACACAGCAAGACCCTTCACACCGCCGAATCCGTCAAGGAGCTTCGGTCTCGCATGGACGCCGAATTCGCCCTCGCTCTCAGGAAAGCTAAGCTCATTAAGGTCCGGTTGGAAGCACTGGACCGCTCCAACGAAGCCAACCGAATCCTGCCGGGCTGCGGACCCGGCTCTTCCGCCGACCGCACTCGGACCTCCGTGGTGAGCGGCTTGAGAAAAAAGCTGAAAGACTCCATGGACAGCTTCAACAACCTGCGCCAAAAGATATCCTCGGATTACAGGGAAACCGTGAAACGTAGGTACTTCACCGTCACCGGTGAAAGCGAGACATTCTTGAAGAAGGCAATACAGGAGCAGGGGAGGGCGAGCATTGTAGAGACGATAAAGGAGATACAAGAGAGGAATGACGCAGTGAGGGAGATAGAGAGGAATCTGAACGAGCTGCACCAAGTTTTCATGGACATGGCGGTGTTGGTGCAGTCGCAGGGGGAACAATTGGACGACATAGAGAGCCACATGGCTCGAGCTAATTCGTTCGTAAGGAGTGGGGTCCAACAACTCCATGTAGCTAAGAAGCACCAGAAAAACAGCCAAATATTTTCCCCAGAGAAGAATGTTCTTCCCATGCTGCACTCGGACCCAAGAAATAAATCATTGATATTGGTGGAGACAGTCGAGCTTAATGAAGGGAAAGCAACTCAGTATGAAAATGGAGAAAATCTCAGAGCTCATATGCTACAAAATATAGCTGTCAACTTCACAGATGGAATGTTCAAAGGAATATACAACGGCAAGCAATGTCACGTCTCTGATATTGCAACGATCTTGAGCAGAGCTTGGAGTGCAGGGAATCCCTTGTTCCTTCAGATGACTCTCTCCATGAGTGAGGATGGCACTATACCCACAAATCCCAAACGAGTAACTGGTGGATCCCTTGAGGAATCAAGGGAAGCTCTTGCAATTGCAGAAACAGATGGCTTGTGTATATTACCATACTTTATGGAATTTGAGGACGGTGGAGATCCAGAAAAGCATTTTCAGGCTCTTTTGTCATTGGCTAAAGAGGAATTCAAAAGGGAAAGGTATTTCAAGAAGCAATTTGAATTAGCACATATCACAAAACTGCCAATGTTTCTGCACATGCGAGCAGCTGCCGCGGATTTTTGTGAATTAATTGAGAGAAATAGGGACAGGTTCACTGGTGGAGTGACTCATTCATTTACTGGCAGTGCAGAAGATTGTATTAAGCTTCTCTCATTTGATAATACGTACATAGGCATAAATGGCTGCTCTTTGAAGACAACTGAGAACCTTGATGTAGTGAAAGGTATTCCTGTTGAGAGAATGATGATTGAAACAGACTCACCATACTGTGAAATCAAGAACACTCATGGAGGAATTGGATTTGTTAAATCTACATGGCCTTCTAAAAAGAAGGAGAAGTATGATCAAGAGTGCATGGTCAAAGGCCGGAATGAACCTTGTTTAGTTAGGGATTTACCATTTTCTTTGAATAATATGGTTGTTGCCAGGCAAGTTCTTGAGATGGTTGCTGGCTGTAAAGGCATCAACGACTTGGGTAAACTTAGTGAAACATTGTACCAAAACACTTGCAGGGTTTTTTTCCCGCATGACCTGGACTCTGCGGCAGATGCACTTCTAGCCGGTGGCGATACCTCGTAG 1884 0.4735 MNDLFSGSFSRFRGEQVSPDNQHHVIQMTDTSPSRDGVNLDKFFSEVESVKEELKELERLNQRLRESHEHSKTLHTAESVKELRSRMDAEFALALRKAKLIKVRLEALDRSNEANRILPGCGPGSSADRTRTSVVSGLRKKLKDSMDSFNNLRQKISSDYRETVKRRYFTVTGESETFLKKAIQEQGRASIVETIKEIQERNDAVREIERNLNELHQVFMDMAVLVQSQGEQLDDIESHMARANSFVRSGVQQLHVAKKHQKNSQIFSPEKNVLPMLHSDPRNKSLILVETVELNEGKATQYENGENLRAHMLQNIAVNFTDGMFKGIYNGKQCHVSDIATILSRAWSAGNPLFLQMTLSMSEDGTIPTNPKRVTGGSLEESREALAIAETDGLCILPYFMEFEDGGDPEKHFQALLSLAKEEFKRERYFKKQFELAHITKLPMFLHMRAAAADFCELIERNRDRFTGGVTHSFTGSAEDCIKLLSFDNTYIGINGCSLKTTENLDVVKGIPVERMMIETDSPYCEIKNTHGGIGFVKSTWPSKKKEKYDQECMVKGRNEPCLVRDLPFSLNNMVVARQVLEMVAGCKGINDLGKLSETLYQNTCRVFFPHDLDSAADALLAGGDTS 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0859 627 Pfam Syntaxin 42 230 IPR006011 GO:0016020
Lele06g0859 627 CDD SNARE_syntaxin1-like 194 254 - -
Lele06g0859 627 PANTHER TATD FAMILY DEOXYRIBONUCLEASE 313 425 - -
Lele06g0859 627 Pfam SNARE domain 231 264 IPR000727 -
Lele06g0859 627 Gene3D - 188 268 - -
Lele06g0859 627 FunFam Syntaxin 132 188 268 - -
Lele06g0859 627 Pfam TatD related DNase 425 608 IPR001130 GO:0016788
Lele06g0859 627 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 37 167 - -
Lele06g0859 627 Gene3D - 38 169 - -
Lele06g0859 627 SUPERFAMILY t-snare proteins 38 250 IPR010989 GO:0016020|GO:0016192
Lele06g0859 627 SUPERFAMILY Metallo-dependent hydrolases 425 609 IPR032466 -
Lele06g0859 627 Gene3D - 305 398 - -
Lele06g0859 627 Gene3D - 420 614 - -
Lele06g0859 627 Coils Coil 40 74 - -
Lele06g0859 627 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 195 257 IPR000727 -
Lele06g0859 627 SMART tSNARE_6 190 257 IPR000727 -
Lele06g0859 627 ProSitePatterns Syntaxin / epimorphin family signature. 201 240 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lele06g0859 627 Coils Coil 191 218 - -
Lele06g0859 627 CDD SynN 40 188 IPR006011 GO:0016020
Lele06g0859 627 SMART SynN_4 35 161 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0859 Lele-ChrLele06 5340455 5345765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g0859 28 268 SNARE and Associated Proteins AT3G11820 64.844 3.88e-111 334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0859 06 5340455 5345765 Lele07g1037 07 6244468 6249827 hybridization
Lele06g0859 06 5340455 5345765 Lele08g0849 08 5347923 5350958 hybridization