LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele06g0858	ATGGCTGCCACGGCCTCTCCTTCCTCTTCTCTCTACAGTCGACTCCACAGCCTCTACGTCACTCCCTCTTCCTTCTCAGTCACCCTCAAATTCCCTCCCAGACCCATTTCTCAGAAACCTCCCAACCTCAATCTCAAATCCCACTTCCTCAATTCTTCTCCTCTCTCACTCTACCATCTTCGTTTGTCTTCGGCTGCCTTCGATGGATTCGAAGTTGCTCAAGACAGCACCAGCGCTGAGCAGGTAGAACCAGAAGCCGAACCCTCTGAAAAATCAGAACAAGAGGAGGATGACCAAAAGTTATCTGAGTCAAACGAAGCTGGGAGGCTCTATGTGGGAAATTTGCCCTTTTCAATGACTTCTTCCCAGTTATCCGAGATTTTTCAAGAGGCGGGCAATGTGGTGTCTGTAGAGATAGTATATGATCGCGTCACGGATAGAAGCAGAGGATTTGCATTTGTCACAATGGGAGGCGCTGAGGATGCTAAAGAAGCCATTCGGATGTTTGATGGCTCCCAAGTTGGAGGTAGAACGGTGAAGGTAAACTTGCCTGAAGTGCCAAGAGGAGGTGAAAGGCTAGTGATGGGGCCAAAAGTAAGGGACAATTACAGAGGCTTCGTGGACAGTCCTCACAAGATATATGCTGGAAACCTTGGATGGGCATTAACTTCACAGGGTCTGAGAGATGCTTTTGCTGGTCAGCCTGGCTTTTTGAGTGCCAAGGTCATCTATGAAAGGGACACTGGAAGATCTCGAGGCTTTGGGTTTGTCTCCTTCGAAACTGCTGAGGATGTTGAAGCTGCTTTGAATGCTATGAATGGTGTGGAGGTTCAAGGCAGGCCTCTGAGATTGAATTTGGCTGCAGATAGGACAAATGCGTCTCCTCCATCAATGGATGAAACTGCAGAAGCTAATGTTGATACCTCGGAATTGGTGTCTAGCTTGAACACATGA	954	0.4822	MAATASPSSSLYSRLHSLYVTPSSFSVTLKFPPRPISQKPPNLNLKSHFLNSSPLSLYHLRLSSAAFDGFEVAQDSTSAEQVEPEAEPSEKSEQEEDDQKLSESNEAGRLYVGNLPFSMTSSQLSEIFQEAGNVVSVEIVYDRVTDRSRGFAFVTMGGAEDAKEAIRMFDGSQVGGRTVKVNLPEVPRGGERLVMGPKVRDNYRGFVDSPHKIYAGNLGWALTSQGLRDAFAGQPGFLSAKVIYERDTGRSRGFGFVSFETAEDVEAALNAMNGVEVQGRPLRLNLAADRTNASPPSMDETAEANVDTSELVSSLNT	317

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele06g0858	317	CDD	RRM_HP0827_like	109	185	-	-
	Lele06g0858	317	Gene3D	-	65	190	IPR012677	-
	Lele06g0858	317	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	108	186	IPR000504	GO:0003723
	Lele06g0858	317	FunFam	33 kDa ribonucleoprotein, chloroplastic	193	297	-	-
	Lele06g0858	317	PANTHER	OS02G0815200 PROTEIN	35	290	-	-
	Lele06g0858	317	Gene3D	-	194	299	IPR012677	-
	Lele06g0858	317	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	211	289	IPR000504	GO:0003723
	Lele06g0858	317	MobiDBLite	consensus disorder prediction	73	104	-	-
	Lele06g0858	317	SUPERFAMILY	RNA-binding domain, RBD	108	290	IPR035979	GO:0003676
	Lele06g0858	317	MobiDBLite	consensus disorder prediction	84	104	-	-
	Lele06g0858	317	SMART	rrm1_1	212	285	IPR000504	GO:0003723
	Lele06g0858	317	SMART	rrm1_1	109	182	IPR000504	GO:0003723
	Lele06g0858	317	MobiDBLite	consensus disorder prediction	290	317	-	-
	Lele06g0858	317	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	213	283	IPR000504	GO:0003723
	Lele06g0858	317	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	110	180	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele06g0858	Lele-ChrLele06	5338083	5339472	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele06g0858	110	287	Eukaryotic Initiation Factors Gene Family	AT3G16380	32.967	3.11e-21	92.0

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele06g0858	06	5338083	5339472	Lele13g1601	13	25001079	25006786	CCT
	Lele06g0858	06	5338083	5339472	Lele14g1534	14	23400950	23404091	CCT
	Lele06g0858	06	5338083	5339472	Lele15g0815	15	4713068	4718904	CCT
	Lele06g0858	06	5338083	5339472	Lele16g0835	16	4669477	4672659	CCT
	Lele06g0858	06	5338083	5339472	Lele07g1036	07	6241805	6243300	hybridization
	Lele06g0858	06	5338083	5339472	Lele08g0848	08	5340814	5346927	hybridization