Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0855 ATGAACGATGCACCAGGCTCCGCTGAGTTCATAGCATCAGGGTTTTGGTATTTCGTGGGAGTTTCCATTGGCGTCATGCTTATCATCACTGCTCTCACCATTGCTTCCTACTTTTGCGCTCGCCCGCTCCTTCCCTTTGCTCAGCCGTCTCACAGGATTAATGCTCCTCCTCATCATTCCGTGGTCGATGTGCAAGGCATAGATGAGGCCACCATTCTAAGTTACCCCAAGCTGCCATTCTGTGAGGCCAAGCACAATGGTTCTGACCAATCACGCGCCACCACATGTTGCTCCATATGTCTATCGGATTACAAGGACACTGATGTGGTTCGGGTGCTGCCTGATTGTGGCCACCTCTTCCATCTCCATTGCGTAGACCCCTGGCTCAGAAAGCACCCCACGTGCCCGAATTGCCGAACATCTCCCCTGTCAACGCCTCTGGCTCCGGTGGTTCCCTCCGCAGCCAACACGCCTACTTAG 480 0.5396 MNDAPGSAEFIASGFWYFVGVSIGVMLIITALTIASYFCARPLLPFAQPSHRINAPPHHSVVDVQGIDEATILSYPKLPFCEAKHNGSDQSRATTCCSICLSDYKDTDVVRVLPDCGHLFHLHCVDPWLRKHPTCPNCRTSPLSTPLAPVVPSAANTPT 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0855 159 Pfam Ring finger domain 97 139 IPR001841 -
Lele06g0855 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 143 IPR013083 -
Lele06g0855 159 SMART ring_2 97 138 IPR001841 -
Lele06g0855 159 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 12 148 IPR045899 -
Lele06g0855 159 SUPERFAMILY RING/U-box 96 142 - -
Lele06g0855 159 CDD RING-H2_PA-TM-RING 96 139 - -
Lele06g0855 159 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0855 Lele-ChrLele06 5315500 5315979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g0855 14 152 C3H Transcription Factor Family AT5G06490 44.910 1.10e-42 139
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0855 06 5315500 5315979 Lele08g0845 08 5325055 5325534 hybridization