Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0845 ATGGAGGTGCCGGACATGGAAGACAAGAACAATGAAAGTCATATGACATCAGCTGCAGCCTTTGTGGAAGGGGGCATTCAAGAAGCATGTGATGACTCTTGCAGCATATGCCTTGAGGATTTTAGTAAAAGCAATCCTCCAACGGTTACTACTTGCAAGCATGATTTTCACCTGCAGTGCATTCTTGAATGGTGTCAGAGGAGTTCCCAGTGCCCTATGTGTTGGCAGTCTATTAATTTCAAGGATTCTACCAGTCAAGAATTGTTTGAGGCAGTGGTTCAGGAAAGGAATTTGAGAGCTACTTCCTCAAGAAATGCAACGATTTTTCATCATCTGGGTCTTGGTGATTTTGACTTGCAGCATTTATCCGTGGGAGTAAGTGAAGCAGATATTGAAGAGAGGATAATTCAACATTTAGCTGCTGCTACCGCCATGGGAAGAGCCCGTCACCTTGGTCGGATAGAAGGAAGTAGGACTAGGTCATTTCCTCATGGTCGTGCTCCTTTCATAGTGTTCTCAACTCCTCCACCTGGTGCTGTTTCAGCTGCTGGAGGGGGAACCGAACCTACTGCAATTCCTGTAGGAAATCCTTCTACCCCACTTACATCTGAAGGAGATGAACCATCACAGCAGATCCCAAGCCTTCAAACACACAGTTCTTTACCTGCCGGATCTACTGTCACAACGATGAATCGTGAAGGAATTGTTTTTAATGATCGAAGTTCTGCTGTCCATTCTTTACCACCTGATGAGGGCGGAGCAGGGCCATCAGAACTTCAGTCATTTTCCGAGTCACTGCGATCCAGGCTTGGTTCAGTGTCTATGAGATACAAAGAGACTATTTCAAGGGGCGCAAGGGGATGGAAGGAAAGGCTCTTCTCTCGTAGTACTTCCATGTCTGATATTGGCTCAGAAGTAAGGAGAGAGTTGAGTGCTGGAATTGCTAGTGTGTCCCGATTGATGGAGCGCCTTGAAACAAGAGAAAAGAACGATAGAGCAGGTGATAGTTCTCTGTCAAATCATTTGGCTGCAGAGACAAGCAACCCAAACAATGGTGAAGCTCGTGGGGTTAACACTCAGAGTGACAACACTTCAGCTGCTTGTTCTGCTGGCCCACGTTCAGATTGA 1128 0.4628 MEVPDMEDKNNESHMTSAAAFVEGGIQEACDDSCSICLEDFSKSNPPTVTTCKHDFHLQCILEWCQRSSQCPMCWQSINFKDSTSQELFEAVVQERNLRATSSRNATIFHHLGLGDFDLQHLSVGVSEADIEERIIQHLAAATAMGRARHLGRIEGSRTRSFPHGRAPFIVFSTPPPGAVSAAGGGTEPTAIPVGNPSTPLTSEGDEPSQQIPSLQTHSSLPAGSTVTTMNREGIVFNDRSSAVHSLPPDEGGAGPSELQSFSESLRSRLGSVSMRYKETISRGARGWKERLFSRSTSMSDIGSEVRRELSAGIASVSRLMERLETREKNDRAGDSSLSNHLAAETSNPNNGEARGVNTQSDNTSAACSAGPRSD 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0845 375 MobiDBLite consensus disorder prediction 192 226 - -
Lele06g0845 375 MobiDBLite consensus disorder prediction 178 226 - -
Lele06g0845 375 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 16 82 - -
Lele06g0845 375 SMART ring_2 34 74 IPR001841 -
Lele06g0845 375 MobiDBLite consensus disorder prediction 326 375 - -
Lele06g0845 375 Pfam Ring finger domain 32 74 IPR001841 -
Lele06g0845 375 ProSiteProfiles Zinc finger RING-type profile. 34 74 IPR001841 -
Lele06g0845 375 SUPERFAMILY RING/U-box 26 82 - -
Lele06g0845 375 MobiDBLite consensus disorder prediction 242 261 - -
Lele06g0845 375 MobiDBLite consensus disorder prediction 336 375 - -
Lele06g0845 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 91 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0845 Lele-ChrLele06 5247227 5250450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g0845 31 82 C3H Transcription Factor Family AT4G00335 48.077 9.37e-14 67.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0845 06 5247227 5250450 Lele06g0845 06 5247227 5250450 ECH
Lele06g0845 06 5247227 5250450 Lele07g1024 07 6157271 6162399 hybridization
Lele06g0845 06 5247227 5250450 Lele08g0835 08 5258810 5262169 hybridization