Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0823 ATGAGAACTTCATGGGCAGATTCTGTTGACAACTCAGGCATTGGTTCTTCAAATGCCAATGCGGCGCGTCCTTCTCGGTCAGCATATGTTCCACCACATCTTCGTAGTAAGCCACCATCTTCAGAACCCCATATGACATCACACCCATCTTCGTTACCGGCGAATGATCGGGTAAATTTTGGCGGGTCAACTGCTGGGTATCGCGGTGGTGGTTCCTTTAATAAGCCTGACCATGGAAGGCAGGACTATGGTTCTAATGGTCGAATTGGTGGGGGTTGGAACAATAGAAGCGGAGGGTGGGAGCGTGAGGTTAACCCATTTGAGAATGATGAAGCTACAGATCATACTTTTAGCGAGCAAGAAAACACAGGCATTAATTTCGACGCTTATGATGATATCCCTGTGGACACTAGTGGGGATAATGTGCCTCCACCTGTAAATACTTTCGCAGAAATAGACTTGGGTGAGGCAGTGAATCAAAATATAAGGAGGTGTAAATACGTCAAACCAACTCCAGTTCAGAAGTACGCCATACCAATTTCTCTTGCGGGGCGAGATCTGATGGCTTGCGCTCAGACAGGATCAGGCAAGACAGCTGCCTTCTGTTTTCCTATCATAAGTGGAATCCTGAGGATGCCGCATGTTCAAAGACCACGTGTAGCACGAACTGCTTTCCCTCTGGCTCTTATCCTATCGCCTACCCGGGAGCTTTCCTGTCAGATACATGACGAGGCTAAAAAGTTTTCCTATCAAACTGGTGTTAAGGTGGTAGTTGCTTATGGAGGAGCACCAATAAACCAACAGTTGCGGGAGCTTGAGAGAGGAGTTGATATTCTTGTGGCAACTCCAGGACGTCTGGTAGATTTGTTAGAGAGGGCTAGGGTGTCACTGCAAATGATCAGATATTTAGCTCTCGATGAGGCAGATCGGATGCTGGATATGGGGTTTGAGCCTCAAATAAGAAAAATAGTTGAACAAATGGACATGCCTCCTCAAGGCATGAGACAAACAATGCTGTTTAGTGCCACTTTTCCCAAAGAGATACAGGGAAGAGTTCTTGATAGCAACTGTCCAATGCGGTTTCACCGCTGGGTGTCTATTTTAAATCATCAGATTGTTTTGCACTGCTGTGTTGTACTTGCAAAATTTCTTACTGCTTCTATTAAGAGACTTGCATCAGATTTCCTGGACAATTATGTGTTTCTGGCTGTTGGAAGGGTTGGTTCAAGTACTGACCTAATTGCTCAACGAGTGGAATATGTCTTGGAATCTGACAAAAGAAGCCACCTCATGGACCTTCTTCACGCCCAGAGGGAAAATGGACTTTATGGCAAGCAAGGTCTGACATTAGTTTTTGTGGAAACAAAGAAAGGAGCTGATGCATTGGAACACTGGTTGTGCGTTAATGGGTTTCCTGCAACTAGCATTCATGGTGACAGATCACAGCAGGAAAGGGAACTAGCATTGAGGTCGTTCAAGAGTGGAAACACACCAATTTTAGTGGCAACAGATGTTGCAGCGCGTGGTCTTGATATTCCACGTGTAGCTCATGTGGTAAATTTTGATCTTCCCAATGACATTGATGATTATGTGCATCGAATAGGAAGAACAGGGAGGGCCGGTAAAATGGGTTTAGCAACAGCCTTCTTCAATGACAATAATCTGTCATTGGCTAAGCCATTGGCTGATCTGATGCAAGAGGCAAATCAAGAAGTACCTGCCTGGCTCACACGTTATGCAGCTAGATCTTCCTATGGTGGTGGCAACAGAAACCGGCGTTCAGGGGGAGCTCGTTTCGGTGGCCGTGATTATAGGAGGGACAACCATCATAATAAAGGAGCTGACTACTACGGTGGAACAAGTGGATACGGTGTTCCTGCCACTTATGGTGGGGGTTATGGTCCTCCAGGGGTTACTAGCGCTTGGGATTAG 1932 0.4612 MRTSWADSVDNSGIGSSNANAARPSRSAYVPPHLRSKPPSSEPHMTSHPSSLPANDRVNFGGSTAGYRGGGSFNKPDHGRQDYGSNGRIGGGWNNRSGGWEREVNPFENDEATDHTFSEQENTGINFDAYDDIPVDTSGDNVPPPVNTFAEIDLGEAVNQNIRRCKYVKPTPVQKYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGILRMPHVQRPRVARTAFPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPQGMRQTMLFSATFPKEIQGRVLDSNCPMRFHRWVSILNHQIVLHCCVVLAKFLTASIKRLASDFLDNYVFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRENGLYGKQGLTLVFVETKKGADALEHWLCVNGFPATSIHGDRSQQERELALRSFKSGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNDNNLSLAKPLADLMQEANQEVPAWLTRYAARSSYGGGNRNRRSGGARFGGRDYRRDNHHNKGADYYGGTSGYGVPATYGGGYGPPGVTSAWD 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0823 643 Gene3D - 405 585 IPR027417 -
Lele06g0823 643 SMART helicmild6 460 541 IPR001650 -
Lele06g0823 643 Pfam DEAD/DEAH box helicase 171 348 IPR011545 GO:0003676|GO:0005524
Lele06g0823 643 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 429 580 IPR001650 -
Lele06g0823 643 MobiDBLite consensus disorder prediction 596 613 - -
Lele06g0823 643 CDD SF2_C_DEAD 414 550 - -
Lele06g0823 643 MobiDBLite consensus disorder prediction 1 101 - -
Lele06g0823 643 MobiDBLite consensus disorder prediction 40 58 - -
Lele06g0823 643 Gene3D - 102 404 IPR027417 -
Lele06g0823 643 FunFam Probable ATP-dependent RNA helicase DDX4 109 356 - -
Lele06g0823 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 227 556 IPR027417 -
Lele06g0823 643 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 178 362 IPR014001 -
Lele06g0823 643 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 147 175 IPR014014 GO:0003724
Lele06g0823 643 MobiDBLite consensus disorder prediction 1 24 - -
Lele06g0823 643 CDD DEADc_DDX3_DDX4 148 408 IPR044763 GO:0003724|GO:0005524
Lele06g0823 643 Pfam Helicase conserved C-terminal domain 426 541 IPR001650 -
Lele06g0823 643 FunFam ATP-dependent RNA helicase RhlB 404 584 - -
Lele06g0823 643 MobiDBLite consensus disorder prediction 585 617 - -
Lele06g0823 643 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 117 580 - -
Lele06g0823 643 SMART ultradead3 166 375 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0823 Lele-ChrLele06 5085564 5089358 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g0823 131 573 Eukaryotic Initiation Factors Gene Family AT3G19760 29.372 2.27e-54 189