Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0816 ATGGACAAGTCGGACAGAGAGACTCATGACTTCATGAACGTTCAGTCCTTCTCCCAGCTTCCTTTTATCCGCCCTACGCCTCACAAAGAGAAGCCCGTTAAGCTCTTCGGCATTGAATTCTCCAACGCCGACTCTCCTAATTCCACCCCCGATGATGCTCCCTCCTCCGGCGCTACCACCACCAACAATAATGTTTTTGACCTTGATTCCAAGGACTCCTCCACCGGCGCCGCCCCCGACAACGCCGAAACCAGCCGCCGGTTCGAATGCCAATACTGTTGTAGAAACTTCCCCACCTCTCAGGCCTTAGGTGGTCACCAAAACGCCCATAAACGAGAGCGTCAGCACGCCAAGCGAGCCCACCTTCAGTCCGCCATGGTGCACAATAGCCTCTCCGTCGACTCCGCCGCTCATGTCTATGGCCTCATGAACTACCGCCTCGGCTCCTCCGTCCCATACTCCGCCTGGCATAATAGTAACTCTGCCGGTGGAAGGTTTTATGGGAGCCATGGCGCCAGCTCGTATCCTCATCTGCAACCTATCAACGGTAGCCCCTTAGCCTTGTGGCGGATCCCCGCCACCGTCCAAAATAACCCTACTACGACTTTCAACCGCGACCGTTCGTTGCCCTTACAGCATCCGTTGCCCTTGCTTACCGGCGACGAAATTAACGTTGGGGCTTCTCATCATCCGGTCGTCGGTTCCGCTTCGCAGAATCGCCTCGTTTATGACTCTAAACCCGGCGTTCACGACCATGTGAGTTTGGATCTTCACCTGTGA 780 0.5551 MDKSDRETHDFMNVQSFSQLPFIRPTPHKEKPVKLFGIEFSNADSPNSTPDDAPSSGATTTNNNVFDLDSKDSSTGAAPDNAETSRRFECQYCCRNFPTSQALGGHQNAHKRERQHAKRAHLQSAMVHNSLSVDSAAHVYGLMNYRLGSSVPYSAWHNSNSAGGRFYGSHGASSYPHLQPINGSPLALWRIPATVQNNPTTTFNRDRSLPLQHPLPLLTGDEINVGASHHPVVGSASQNRLVYDSKPGVHDHVSLDLHL 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0816 259 Pfam C2H2-type zinc finger 87 112 - -
Lele06g0816 259 PANTHER ZINC FINGER PROTEIN GIS 1 259 IPR044291 GO:0003700|GO:0009739|GO:0010026|GO:0010090
Lele06g0816 259 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Lele06g0816 259 MobiDBLite consensus disorder prediction 1 82 - -
Lele06g0816 259 Gene3D Classic Zinc Finger 69 139 - -
Lele06g0816 259 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 115 IPR013087 -
Lele06g0816 259 MobiDBLite consensus disorder prediction 41 81 - -
Lele06g0816 259 SUPERFAMILY beta-beta-alpha zinc fingers 85 116 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0816 Lele-ChrLele06 5026493 5027272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g0816 1 259 C2H2 Transcription Factor Family AT3G58070 39.483 2.51e-45 151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0816 06 5026493 5027272 Lele13g1573 13 24795692 24798895 CCT
Lele06g0816 06 5026493 5027272 Lele15g0851 15 4941621 4946028 CCT
Lele06g0816 06 5026493 5027272 Lele06g0816 06 5026493 5027272 ECH
Lele06g0816 06 5026493 5027272 Lele07g0990 07 5958430 5959209 hybridization
Lele06g0816 06 5026493 5027272 Lele08g0804 08 5059370 5060149 hybridization