Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0804 ATGAACCTTGATTTGAATCTGGGTCCTGATCCAGAGCCAGCAGCTGGCTCCATAACCAATGAATCCGTGAGCTTAGAGGATTGGATTGAACAGCCTAGGGTTAGCGAAGCAGTTAGACATAGGACTCGACAGAGGTGGAGATGGCGGCATCTTCACATGAATCCTCCTGAACCCCAACGTAGCTTTATTTTTTCGCCTGAAGTCCAACATATCTCAATGGAATTGAATAATTTGTTGGCCAACCCTGGTAATGGAGGTGCGTTTCAAGCTGGGGAAGGTAGCGTGGCAGCTGAAGATAGAACAGAGGTGGCACCAAAAGCATGTGAGACAAACAATGGTGTTACGGAGGATGAAGCAGCAGATAAGAAGGATGATGTTGAAAAGGGTAGTGGAAATGATGGGAGCTTTTTTGATTGTAACATCTGTTTGGACTTGGCTAGAGATCCTGTTGTGACTTGCTGTGGTCATTTGTTTTGTTGGCCATGCCTCTATAGGTGGCTACATGTCCATTCAGATGCTAAGGAATGTCCAGTTTGCAAGGGAGAGGTATCATTTAAAAATGTTACGCCAATTTATGGTCGTGGAAACAATGCCCGTCAACCTGATGAAGATCCTACTCTTAAAGTCCCTCTTAGACCCCATGCTGGGCGTGTTGAAAGTCTGAGACAAACCATTCATCGAAATGCATTTGCATTCCCAGTGGAAGAGGTGATTCGGCGTCTTGGGAGTAGATTCGATCTCTCTCGAGATGAAGGACAGCCGCATGAGCTTGACAATGCCAGGGAAGCAGCCGACAGAACCACTACCTTGTTAAATAGATTTTTGACCTCTCGAGCATTACGGAGAGAGCATATTCATGGGGCAACTGCAGATGATGTGGTGGACTTAACTCAAAACAACATTGGTGGCCCTGAGGCAGGGGATAACCGCAGGGTTCAATCCCTTTTACTTCGAAGAACGCAGTCACATAGAACATCACTTTCTTCTCTTTCATCAGCTCTGAGTTCAGCTGAGAGATTTGTGGAGGCGTACATCCGTAGCCGTTCTATAGGTAGAAACCAAGAGCAGCCTCCACCGGTGGATGATAGAGATTCCTTTTCAAGTGTTGCTGCTGTCATACACTCAGAGAGTCAAGTAGACACTAATGTAGAAATTGATTCCATGGTATCCTTGTCAACATCCTCTTCCAGGAGGAGAAATGACGCATCTCGGGTTTCTGATGTGGATAGGCATGCCAATGTGCTCGGTGGTATAGTTTTGGTAAAGATTCCATCTGTTGAGTCACCAGCTTTGCAAGTTAGTGCGAGGAGAGAGCAATCTTATGATTATTGTGTCATTCCTGCTGAGGCTATGTAG 1356 0.4594 MNLDLNLGPDPEPAAGSITNESVSLEDWIEQPRVSEAVRHRTRQRWRWRHLHMNPPEPQRSFIFSPEVQHISMELNNLLANPGNGGAFQAGEGSVAAEDRTEVAPKACETNNGVTEDEAADKKDDVEKGSGNDGSFFDCNICLDLARDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVSFKNVTPIYGRGNNARQPDEDPTLKVPLRPHAGRVESLRQTIHRNAFAFPVEEVIRRLGSRFDLSRDEGQPHELDNAREAADRTTTLLNRFLTSRALRREHIHGATADDVVDLTQNNIGGPEAGDNRRVQSLLLRRTQSHRTSLSSLSSALSSAERFVEAYIRSRSIGRNQEQPPPVDDRDSFSSVAAVIHSESQVDTNVEIDSMVSLSTSSSRRRNDASRVSDVDRHANVLGGIVLVKIPSVESPALQVSARREQSYDYCVIPAEAM 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0804 451 SUPERFAMILY RING/U-box 135 192 - -
Lele06g0804 451 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 210 IPR013083 -
Lele06g0804 451 MobiDBLite consensus disorder prediction 115 129 - -
Lele06g0804 451 ProSitePatterns Zinc finger RING-type signature. 154 163 IPR017907 -
Lele06g0804 451 MobiDBLite consensus disorder prediction 109 129 - -
Lele06g0804 451 Pfam Zinc finger, C3HC4 type (RING finger) 139 179 - -
Lele06g0804 451 CDD RING-HC_AtRMA_like 137 181 - -
Lele06g0804 451 FunFam Zinc finger family protein 120 193 - -
Lele06g0804 451 SMART ring_2 139 179 IPR001841 -
Lele06g0804 451 ProSiteProfiles Zinc finger RING-type profile. 139 180 IPR001841 -
Lele06g0804 451 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 113 318 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0804 Lele-ChrLele06 4932686 4934538 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g0804 1 409 C3H Transcription Factor Family AT3G58030 53.023 2.71e-128 377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0804 06 4932686 4934538 Lele06g0804 06 4932686 4934538 ECH
Lele06g0804 06 4932686 4934538 Lele07g0975 07 5848566 5849861 hybridization
Lele06g0804 06 4932686 4934538 Lele08g0792 08 4955910 4957202 hybridization