Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0784 ATGGCAGCCTGCTATTTTGTTGTTGCAGATGAAAGCGAAGACATAACAAGACCTAACTCTGAGAAGTTTGATCTGATCTTTAGAGGTGTGGACAGTTTACATGAACGAGTTAGACAACCCAGAGAACAAGTGGCTGATGCAAAAGCTCTTCTGGACATCACGGAGTGCTTGGTATCATCTGTGAAAGCTCACATCAATGATGGAATAACTCCTTCAGACTTTATCTCTCATGTCCTTAACGAATTTGGAGAACAATGTGAATCAAATACAAGCGCTAAGGACTGCAGGAACTCAATACTTTGGAAGGATCTTGGGCTTGCTGTATCAGGTGTTTTGGGAAGAGTTGCTGGGTGCTGCACCATGATTGGCCCCATGGACACTGAAATAAATCAGAGGAAGACTGTTAATCGTAGAAAGCGAATGAGACCCGCTCAAATTGATCGGCCAGAAGAGGTAAAACTTGATGGTTGTTCTAAGGAAAAGATAGTTGATACTGATGAAAACATGGCAACCATGTTTAATATCTTGAGGGAAAACAGAGTTGTTAGGCTTGAAAATTTGGTATTGAACAGGAACTCTTTTGCCCAGACGGTGGAGAATTTATTTGCTCCTTCGTTTTTAGTCAAAGATGGAAGGGCCGAAATAAAAGTGAATGAGAAGGGAATGCAACTAGTCTACGCAGTTCTCTCTGGTGAAGTTGCTCACAGACACTTTGTCTTCAGATTTGACTTTAAAGATTGGGAGGTTATTTTTATTCGGATCTTGATCTACTGCTTCCTTAAAATGGATGCTCGTAAGAGAGGGAGGCCCGAGGCTGGCTTCAACGTTAATGGTGGCCTCAAGAAGACCAAGCAAGGCAATTTTATCACTGCTGGCTGCCCTTTTGGAGAGGGTTGCCACTTCTTGCACTATGTTCCTGGTGGTTATAACGCTGTTGCTCAGATGATGAATTTAGCCCCTGTTGCTCCTGCTGCTTCTAGAAATGTTGCAGCCCCACCACGGGTTCATAATGGCTCCACTCCTGCTGGCAAAACTCGCATATGCAATAAATATAATTCTGCAGAAGGTTGCAAATTTGGCGATAAGTGTCATTTTGCACATGGTGAATGGGATCTATTGCAGATCCGTATACCTCCCAACCGAATGGAGCCCCCACCTGGTCCTATGGCTAGTTTTGGCGCCAATGCCACTGCCAAGATCAGTGTAGAAGCATCCTTAGCTGGAGCAATCATTGGGAAGGGTGGTGTAAACTCTAAGCAGATCTGTCGCAAAACAGGAGCCAAACTATCAATTCGGGATCATGAGTCAGATCCAAATCTCAGAAACATTGAACTTGAGGGAAGCTTTGAACAAATTAAGGAAGCTAGTAACATGGTGAAAGAGTTGCTTGCAACCATCTCAATGTCTGCGGCACCTAAAATTCCCGGTGGAAGCAATTATAAGACTAAGTTGTGTGAGAATTTTGCCAAAGGATCTTGTACCTTCGGAGATAGATGTCATTTTGCACATGGGGCTTCCGAACTGCGTAAAACAATAACTTGCACTGTTTCCTCTACGGTGTTTTTTCTTGTGCGTGTTTTTCGATTCTGTTCTGTTGGATCGTTGGCATGTTTTTCTGCCATATTAGTCATATTGGTCTCACTTATGTGTGGTATGGTGTGTGGGTCTATGGCTTACCAATGGGTTGTCATGCTCACCCACACCAGACACACAGCATATCCATGTAACTGTAAGCCAGGGAGAGATTTCCATATTCTTGGTTTAAATGCCCACTTGCACTGCCACATTACCAGTGTGCTTAATGAACCTAGGCAAGTCACCCATTCCCAGTTTGGCTCAGTTCAACAACGATCGCAGCGGAATTACATCTTTGAGAAATAA 1881 0.4365 MAACYFVVADESEDITRPNSEKFDLIFRGVDSLHERVRQPREQVADAKALLDITECLVSSVKAHINDGITPSDFISHVLNEFGEQCESNTSAKDCRNSILWKDLGLAVSGVLGRVAGCCTMIGPMDTEINQRKTVNRRKRMRPAQIDRPEEVKLDGCSKEKIVDTDENMATMFNILRENRVVRLENLVLNRNSFAQTVENLFAPSFLVKDGRAEIKVNEKGMQLVYAVLSGEVAHRHFVFRFDFKDWEVIFIRILIYCFLKMDARKRGRPEAGFNVNGGLKKTKQGNFITAGCPFGEGCHFLHYVPGGYNAVAQMMNLAPVAPAASRNVAAPPRVHNGSTPAGKTRICNKYNSAEGCKFGDKCHFAHGEWDLLQIRIPPNRMEPPPGPMASFGANATAKISVEASLAGAIIGKGGVNSKQICRKTGAKLSIRDHESDPNLRNIELEGSFEQIKEASNMVKELLATISMSAAPKIPGGSNYKTKLCENFAKGSCTFGDRCHFAHGASELRKTITCTVSSTVFFLVRVFRFCSVGSLACFSAILVILVSLMCGMVCGSMAYQWVVMLTHTRHTAYPCNCKPGRDFHILGLNAHLHCHITSVLNEPRQVTHSQFGSVQQRSQRNYIFEK 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0784 626 ProSiteProfiles Type-1 KH domain profile. 395 459 - -
Lele06g0784 626 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 385 465 IPR036612 GO:0003723
Lele06g0784 626 Pfam KH domain 398 461 IPR004088 GO:0003723
Lele06g0784 626 PANTHER UNCHARACTERIZED 8 250 IPR027786 GO:0005634|GO:0006281|GO:0030915
Lele06g0784 626 Gene3D - 338 374 - -
Lele06g0784 626 Gene3D - 481 511 - -
Lele06g0784 626 FunFam Zinc finger CCCH domain-containing protein 475 510 - -
Lele06g0784 626 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 480 504 IPR000571 GO:0046872
Lele06g0784 626 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 344 369 IPR000571 GO:0046872
Lele06g0784 626 ProSiteProfiles Zinc finger C3H1-type profile. 342 370 IPR000571 GO:0046872
Lele06g0784 626 Pfam Nse4 C-terminal 182 250 IPR014854 -
Lele06g0784 626 Pfam RNA-binding, Nab2-type zinc finger 292 303 - -
Lele06g0784 626 SUPERFAMILY CCCH zinc finger 478 510 IPR036855 GO:0046872
Lele06g0784 626 Gene3D K Homology domain, type 1 392 480 IPR036612 GO:0003723
Lele06g0784 626 CDD KH-I 397 460 - -
Lele06g0784 626 SMART c3hfinal6 342 369 IPR000571 GO:0046872
Lele06g0784 626 SMART c3hfinal6 479 505 IPR000571 GO:0046872
Lele06g0784 626 SMART kh_6 394 464 IPR004087 GO:0003676
Lele06g0784 626 SUPERFAMILY CCCH zinc finger 343 372 IPR036855 GO:0046872
Lele06g0784 626 ProSiteProfiles Zinc finger C3H1-type profile. 479 506 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0784 Lele-ChrLele06 4852944 4861936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g0784 8 250 Non-SMC Element family AT1G51130 47.809 2.99e-71 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele06g0784 Nse4_C 2.4e-17 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1541 13 24590308 24593823 Lele06g0784 06 4852944 4861936 CCT
Lele14g1461 14 22974390 22981412 Lele06g0784 06 4852944 4861936 CCT
Lele15g0884 15 5133857 5136900 Lele06g0784 06 4852944 4861936 CCT
Lele06g0784 06 4852944 4861936 Lele07g0962 07 5762274 5767381 hybridization
Lele06g0784 06 4852944 4861936 Lele08g0779 08 4873814 4877914 hybridization