Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0781 ATGTTAGCATTTCGACAGCTAGATTCAAGTCTTATACCTGAAGCTGAAGCCTTCTGTAATAATGCAACGCACAGAATTTTATGCCATACGCTCCAATTTGGTATTAGTTATTGTGAATACATGGATATCAATCACGCCTGGAATATGGGAAGTTGCAGCCAAACGCTCGCCGGAGGAGGAGCCCAACAACAACCACCACCACCACCAAACCAAGGAGGCCCTGCAAAATCCTCCGCCACCATCATGAGCCGTTTTGAATCTCCAGCTTCTGCTTTCTACGCCACAGAACGATGCATGGGGTTTCAGGTTCAGCAATATGAATCCCAGCTTGGTAATCCCTCTTTGACCTCTCAGTTCTCCAAGCTCAACGACTTGGATTTCCCTCTTTATCAGTCTGATCCCAGCTTCGAATCGTCCAATGATACCCTGCAAGCAATGGTGATGAAATCTCCATTGAGTAGTAACCAATACTCAATGAAATCCCCTGAAAAATCCAATAAATTTTCTTACGGGAATTTGCCCACCACCAAGTTTCTTCCTTTTCAACAACACAGCTTGTTTCTTAACGATTCTGCCTCAGTTAATATGAACTCACCTTATAAGGGAAATCAGGATCATACGGTTGGTCTTGGCTCATATAATTTACATGTTGATCAGACGAGTTTCTCTTCTCAGCAAGAGAATAAGCTGTCTCCACCACCACTTACATCAGAAGCGAGTGTGTCAGCTGTTTCTGGCTATCAGAATTCCAATGGGACACCTGTCTCAAGCAAAACTCGTATTAGGTGGAACCAGAATCTTCATGATAAGTTTGTTGAGTGTGTGAATCGCCTTGGAGGTGCTGAAAAAGCGACACCAAAAACTATATTAAAGCTGATGGACTCCGATGGATTGACCATCTTCCATGTGAAGAGTCATTTGCAGAAATACAGAATTGCAAAATACATGCCAGACTCAGCTCAAGGAAAGTCTGATAAAAGATCCAATGTAGAAGATGTGCACCATCATCTTGACACCAAAACTGGGTTGCAGTTAAGAGAGGCACTTCAGCTGCAATTAGATGTCCAAAGGCGCCTTCATGAACAGCTAGAGATTCAGAGAAAGTTGCAGTTGAGAATTGAGGAACAGGAGAGGCGGCTGAAGATGATGTTTGATCAGCAGCAAAAGACGAGTGATAGCCTCAAGAATACTCAGAAATTGAGCAGCACAGCCAATGATAATAATAGCGATACATCAAATAATCATAAAGATTTTGAATTATCAACTTCTGAAGGGTCTGGAAATTCTTTCTTCCATTCCAAGATAAGTTAG 1311 0.4241 MLAFRQLDSSLIPEAEAFCNNATHRILCHTLQFGISYCEYMDINHAWNMGSCSQTLAGGGAQQQPPPPPNQGGPAKSSATIMSRFESPASAFYATERCMGFQVQQYESQLGNPSLTSQFSKLNDLDFPLYQSDPSFESSNDTLQAMVMKSPLSSNQYSMKSPEKSNKFSYGNLPTTKFLPFQQHSLFLNDSASVNMNSPYKGNQDHTVGLGSYNLHVDQTSFSSQQENKLSPPPLTSEASVSAVSGYQNSNGTPVSSKTRIRWNQNLHDKFVECVNRLGGAEKATPKTILKLMDSDGLTIFHVKSHLQKYRIAKYMPDSAQGKSDKRSNVEDVHHHLDTKTGLQLREALQLQLDVQRRLHEQLEIQRKLQLRIEEQERRLKMMFDQQQKTSDSLKNTQKLSSTANDNNSDTSNNHKDFELSTSEGSGNSFFHSKIS 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0781 436 MobiDBLite consensus disorder prediction 384 436 - -
Lele06g0781 436 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 258 313 IPR006447 GO:0003677
Lele06g0781 436 MobiDBLite consensus disorder prediction 221 258 - -
Lele06g0781 436 SUPERFAMILY Homeodomain-like 256 312 IPR009057 -
Lele06g0781 436 MobiDBLite consensus disorder prediction 386 436 - -
Lele06g0781 436 Pfam MYB-CC type transfactor, LHEQLE motif 344 390 IPR025756 -
Lele06g0781 436 MobiDBLite consensus disorder prediction 56 78 - -
Lele06g0781 436 Coils Coil 346 386 - -
Lele06g0781 436 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 238 418 IPR044848 GO:0003700
Lele06g0781 436 Gene3D - 257 316 - -
Lele06g0781 436 FunFam Myb family transcription factor 257 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0781 Lele-ChrLele06 4828158 4830241 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g0781 255 414 G2-like Transcription Factor Family AT3G04450 50.000 9.82e-47 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele06g0781 Myb_CC_LHEQLE 1.2e-17 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0781 06 4828158 4830241 Lele07g0958 07 5725496 5732308 hybridization
Lele06g0781 06 4828158 4830241 Lele08g0776 08 4839065 4847189 hybridization