Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0780 ATGGATGATTTCAAAAAGAGAAAGCTAGAAGAGGCCGGCAACGGCGATGCTTCTTCAAAGGAAGAGCTTCGCTTTCTCCTTGACCCGCTGGCCAAGCCCCAGCTTGTTGATCTTCTCTCTAAACTAGGGTCCCAATATCCTTCAATTGCAGAAGAAATAAAAAGTATTGCAAGTGCAGATCCTGTCCATCGAAAGCTTTTTGTTCGTGGCTTGGCCTGGAATACCAGTTCGGAAACCTTGTGTGCTGCATTTCAAGAGCATGGAGAAATTGAGGAAGGGGCTGTTATATATGATAAAGCAACAGGAAAATCCCGTGGTTATGGTTTCATCACTTACAAACATATGGAATCAACTCATCGTGCATTGAGAGCACCAAGCAAGTTAATTGATGGCAGGTTGGCTGTCTGTAATCTAGCTGCTGAGGGCCTAAGTGGAGCAAGTAATGCCCCTGATCTTTCCCTGAGGAAGCTGTATGTTGGAAGCTTATCACCAGAAGTCAGTAGTGAAATGTTACTTAACTTTTTTGGGAGGCATGGTGAAATAGAGGAAGGCTCAGTTGCATATGACAAGGATACAAATGAATCTCGTGGTTTTGGCTTTGTGACATACAAGACGGCAGAAGCTGCAAAGAAGGCCATAGATGATCCAGAAAAGACTCTTGGGGGGAGGAATATAATTGTAAAATATGCGGATTCCCACAAGGGTAAAACAGGGCAGCCATCAGGGGTTCCAATGACAACCTTACCTATGGCTCCTGGATATGTGCAGATGCAGCATGTCAAAACACATATTAGCAATCCCCAGTTTGGGTACAATTACCCTCAGACCGTAGCATCATACCCTGCACATTCTTATCCAAGTCCTCCCACCGCACCTGCTCCTTATCCTACACAAGGCCAAGTTTCTTATCCTTCAGTTTCTGGCAAGTCAACTACGCCTGTTGGAATGAACAACTACCCATATTACTATCCTAAGGAATAA 981 0.4455 MDDFKKRKLEEAGNGDASSKEELRFLLDPLAKPQLVDLLSKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKHMESTHRALRAPSKLIDGRLAVCNLAAEGLSGASNAPDLSLRKLYVGSLSPEVSSEMLLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTAEAAKKAIDDPEKTLGGRNIIVKYADSHKGKTGQPSGVPMTTLPMAPGYVQMQHVKTHISNPQFGYNYPQTVASYPAHSYPSPPTAPAPYPTQGQVSYPSVSGKSTTPVGMNNYPYYYPKE 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0780 326 MobiDBLite consensus disorder prediction 283 310 - -
Lele06g0780 326 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 232 IPR000504 GO:0003723
Lele06g0780 326 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 141 IPR000504 GO:0003723
Lele06g0780 326 CDD RRM_RBM24_RBM38_like 64 139 - -
Lele06g0780 326 Gene3D - 145 245 IPR012677 -
Lele06g0780 326 MobiDBLite consensus disorder prediction 1 20 - -
Lele06g0780 326 SUPERFAMILY RNA-binding domain, RBD 59 141 IPR035979 GO:0003676
Lele06g0780 326 FunFam UBP1-associated protein 2C 142 240 - -
Lele06g0780 326 MobiDBLite consensus disorder prediction 296 310 - -
Lele06g0780 326 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 132 IPR000504 GO:0003723
Lele06g0780 326 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 225 IPR000504 GO:0003723
Lele06g0780 326 SUPERFAMILY RNA-binding domain, RBD 149 240 IPR035979 GO:0003676
Lele06g0780 326 SMART rrm1_1 156 228 IPR000504 GO:0003723
Lele06g0780 326 SMART rrm1_1 65 137 IPR000504 GO:0003723
Lele06g0780 326 Gene3D - 55 143 IPR012677 -
Lele06g0780 326 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 56 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0780 Lele-ChrLele06 4822116 4825114 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g0780 151 274 C2H2 Transcription Factor Family AT2G19380 29.577 7.68e-14 70.5