Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0778 ATGGGTTCATCCTCTCTGTCCAATTCCTCCGCCCACTGCCTTCACGGCTTGAAATTTGACCACAAAATCTACTTTGAGGATGAGGCTGTCGGAGCTCATCCCAAATCCACCGCCGGTAGCCGGTCCTCTTCATCGAAGAAGGGAAGGGGTGGCCCTGTTCAAGGAGCTCAGCCTCCAAGGTGTCAGGTTGAGGGGTGTAAGGTAGATCTGAGTGACGCCAAGGCTTACTATTCAAGGAATAAAGTCTGTGGCTTTCACTCTAAATCCCCTAAAGTCATTGTCGCTGGTCTGGAGCAAAGGTTTTGCCAACAGTGCAGCAGATTCCATCAGCTCACTGAATTTGATCAAGAAAAACGAAGTTGCCGCAGGCGACTTGCAGGCCATAATGAACGTAGGCGAAAGCCTCAACACAGCTCCTTGTTGATCTCTCCCTATGCCAGATTTTCTCCAGCTGTATTTGATAACCGGGGCAGAGTTGGTGGTTTTCTGATGGAATTGGCTGCATACCATAAGCCAACTCTGAGGAATGAGTTGCCAGCTGCAACATCAATGGAGCAAGTTCCAGTCAATCAAAGTTCAACACCTCCATGGCAAGGCTCTGGTTCCAGAAATCCTCTTGGGGAATGCTTTGCTGGAATTGCAGAAACTAGCTGTGCTCTCTCTCTTCTGTCAAATCAAACATGGCGCCTCAGAAACACACCTCCAGCTCTTGGGCTGAACAACTTGTGTTTTGCTGCATCTTCTCATGGTGCTCCCGTCCATCACCTTTCAAATGCCTCGGCGTCTTTCAATTGTTTGCATCATGAGGTTGTCCCTGATCTTGCTGCGGATCAGATTTCACTGTCTAATAGTGGACTTCCTGGTGGCGAGCTCGTGATGCCACAATCCGAAGCCTACGAGTCTTCTCAGCTGATGCACTGGTCACTCTGA 930 0.4946 MGSSSLSNSSAHCLHGLKFDHKIYFEDEAVGAHPKSTAGSRSSSSKKGRGGPVQGAQPPRCQVEGCKVDLSDAKAYYSRNKVCGFHSKSPKVIVAGLEQRFCQQCSRFHQLTEFDQEKRSCRRRLAGHNERRRKPQHSSLLISPYARFSPAVFDNRGRVGGFLMELAAYHKPTLRNELPAATSMEQVPVNQSSTPPWQGSGSRNPLGECFAGIAETSCALSLLSNQTWRLRNTPPALGLNNLCFAASSHGAPVHHLSNASASFNCLHHEVVPDLAADQISLSNSGLPGGELVMPQSEAYESSQLMHWSL 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0778 309 FunFam Squamosa promoter-binding-like protein 14 53 122 - -
Lele06g0778 309 SUPERFAMILY SBT domain 59 140 IPR036893 GO:0003677|GO:0005634
Lele06g0778 309 MobiDBLite consensus disorder prediction 36 50 - -
Lele06g0778 309 Pfam SBP domain 61 134 IPR004333 GO:0003677
Lele06g0778 309 MobiDBLite consensus disorder prediction 32 60 - -
Lele06g0778 309 Gene3D - 51 122 IPR036893 GO:0003677|GO:0005634
Lele06g0778 309 ProSiteProfiles Zinc finger SBP-type profile. 58 135 IPR004333 GO:0003677
Lele06g0778 309 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 12 241 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0778 Lele-ChrLele06 4816584 4818040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g0778 17 225 SBP-box Gene Family AT2G42200 50.000 6.32e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lele06g0778 SBP 3.8e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0778 06 4816584 4818040 Lele13g1541 13 24590308 24593823 CCT
Lele06g0778 06 4816584 4818040 Lele14g1461 14 22974390 22981412 CCT
Lele06g0778 06 4816584 4818040 Lele15g0884 15 5133857 5136900 CCT
Lele06g0778 06 4816584 4818040 Lele07g0954 07 5711390 5715552 hybridization
Lele06g0778 06 4816584 4818040 Lele08g0774 08 4831699 4833160 hybridization