Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0762 ATGGATTCCAATTCCTTCCTCAATTATCAACACCAACGTCAGCCCAATTCTGGGTTGCTTCGCTATTGCTCTGCGCCTACTTCGGTTCTTGCAAATTTCACGCAGTCCCTTGGTTCTGATCTCAGTAAGGGCAATAACCCGTGGGAGACTTCTGAATCCGAGAAGCTAATCTCTAGATTCGTAAATAACGACGACCTGGATTCGTCTAGTTTCCAGGAATTCGAAGCCAAGGCGCTTAGAGCCCCGACCGAGGAAACACTCAACCATATGAACTCCTATAATGGTTTGCCCCCTCACTACCCAAGGCTAAAGTCCACAGCGAGTTCTGCCATGGATACTTCGTATGGACTGGTGGAATCATTGGGAATGGATCAAATGCAGCCGAAGAGCTTCAGCCCCAATCTTCTCAGGCAAAGCAGCTCCCCTGCCGGGCTTTTCTCCAACATTTCCTTTCCAAATGGGTATTCAACTGTTAAGGCTGTTGGAAACTATGGTGTGGTGGCGAATAGCAGTAACGGTGAAGGGAGTCCATCCATGAGCAGATTGAAGAATCAGTTCGGCTTCTTACCAAGAAGTAATTCTTCCTTAGGGACGATGTCACAGATATCGGAGATAGAGGGCGAGAGCATTGAAGCGACAAACCCTGACAATGGGGGCTTGGGATCTGTGAATGGTTATGGCCCTGGGTTTCCATACTCTTCGTGGAATGATGCGTCCCATGTCTCAGAAAATCTTGGTGGCTTGAAAAGAGAGCCAAGCGATAGTGAAAAATTATTTTCTAATGCTCAGAATGGACCGCAAGGAAATCGAGTTCACATGTTATCTCATCACTTGAGTTTGCCAAAACCTTCAACAGATATGGGTGCCATGGAGAAGTTTCTTCAATTCTCAGATTCTGTTCCTTGTAAAATCAGAGCAAAACGAGGCTGTGCTACCCATCCTCGAAGTATTGCAGAAAGGGTAAGAAGAACTCGGATCAGTGAACGAATGAGAAAACTTCAAGAGTTGGTCCCAAACATGGACAAGCAAACAAACACAGCAGACATGTTGGACTTGGCCGTTGAGTACATTAAAGATCTCCAAAGCCAATTCAAGACTCTCAGTGAAAAAAGGGCAAACTGCAAATGTATGAGCACGCAGAAGGCAGATACAAATCATGTCATTTGA 1167 0.4576 MDSNSFLNYQHQRQPNSGLLRYCSAPTSVLANFTQSLGSDLSKGNNPWETSESEKLISRFVNNDDLDSSSFQEFEAKALRAPTEETLNHMNSYNGLPPHYPRLKSTASSAMDTSYGLVESLGMDQMQPKSFSPNLLRQSSSPAGLFSNISFPNGYSTVKAVGNYGVVANSSNGEGSPSMSRLKNQFGFLPRSNSSLGTMSQISEIEGESIEATNPDNGGLGSVNGYGPGFPYSSWNDASHVSENLGGLKREPSDSEKLFSNAQNGPQGNRVHMLSHHLSLPKPSTDMGAMEKFLQFSDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQSQFKTLSEKRANCKCMSTQKADTNHVI 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0762 388 CDD bHLH_AtbHLH_like 315 368 IPR045239 -
Lele06g0762 388 Pfam Helix-loop-helix DNA-binding domain 315 361 IPR011598 GO:0046983
Lele06g0762 388 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 310 360 IPR011598 GO:0046983
Lele06g0762 388 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 74 378 - -
Lele06g0762 388 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 313 377 IPR036638 GO:0046983
Lele06g0762 388 SMART finulus 316 366 IPR011598 GO:0046983
Lele06g0762 388 Gene3D - 311 385 IPR036638 GO:0046983
Lele06g0762 388 FunFam Transcription factor bHLH130 family 311 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0762 Lele-ChrLele06 4706427 4708506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g0762 1 366 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 49.231 2.69e-97 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele06g0762 HLH 3.1e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0762 06 4706427 4708506 Lele06g0762 06 4706427 4708506 ECH
Lele06g0762 06 4706427 4708506 Lele07g0941 07 5644295 5646378 hybridization
Lele06g0762 06 4706427 4708506 Lele08g0761 08 4752306 4754321 hybridization